Hello, I have generated a Polder/omit map in Phenix and am trying to visualize in Pymol to make a figure for publication. The issue is that the feature I want to see is cut in half because it is on the edge of the unit cell. Is there a way to solve this? I am wondering if you can generate maps to symmetry mates which, when combined, would show the complete feature?
Another issue is that the maps generated in Phenix (or CCP4 or Coot) do not align with the pdb in Pymol. I have been generating enough symmetry mates in Pymol to expand into the map area and then deleting all unwanted molecules. This normally isn't a big deal, but I am working with 36 complexes in the ASU and far distances between the map and the pdb positions, and it's really bogging down my computer. I'd love to figure out a way to have the map align with the pdb. Thank you Kathryn Finton, PhD kfin...@fhcrc.org<mailto:kfin...@fhcrc.org> 206.667.2801 (Desk) 206.667.5588 (Lab) [https://ci6.googleusercontent.com/proxy/wJKoE0y9yp3v5Q-EruldC9J-xStNHXG75wWe9a0yZ0TmX0wxV_164sCCwXN1pxeGRVvn2CMg1D-ciTorD_5h4FrequL3xYICSYjSnx4BNJ2wUdSGSnVkyl_1VmTcWCBDF6miGKM=s0-d-e1-ft#http://www.fredhutch.org/content/dam/public/email-signatures/2/fred_hutch_logo.png]<http://www.fredhutch.org/> Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. Weintraub bldg, B3-183 Seattle, WA 98109 fredhutch.org<http://www.fredhutch.org/>
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