In the case of
cmd.save("together.pdb", "all", "0", "pdb")
it saves everything in one pdb when the protein is present only in the
first model, while I need to obtain its representation in all models
Cheers
E.пт, 7 янв. 2022 г. в 13:14, Saurabh Gayali <saurabh.gay...@gmail.com>: > Have you tried the save command after opening both files? > https://pymol.org/dokuwiki/doku.php?id=command:save > Though not sure how the different poses will merge. > Also looking for a solution for a similar problem. > > ------------------------------ > > *Saurabh Gayali* / Post Doctoral Fellow > saurabh.gay...@gmail.com / +91 8800412916 > > *CSIR-IGIB* > <http://example.com/>New Delhi, India > > > [image: Mailtrack] > <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=signaturevirality11&;> > Sender > notified by > Mailtrack > <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=signaturevirality11&;> > 07/01/22, > 05:43:49 pm > > On Fri, Jan 7, 2022 at 3:43 PM Enrico Martinez <jmsstarli...@gmail.com> > wrote: > >> Dear Autodock Users! >> I am dealing with the structural analysis of the protein-ligand >> interactions observed in the protein-ligand docking using VINA. >> Basically operating with the outputs I have two different pdb files: >> 1) for docking receptor (1 protein model) as well as for 2) docking >> sollutions (100 solutions). So I use pymol to open the both filles and >> visualize them >> >> pymol sollutions.pdb receptor.pdb >> >> May you suggest me some pymol command to merge the both in the pymol >> to. create multi-model PDB consisted of the both receptor and ligand >> poses in order then I could perform some structural analysis of this >> combined complex? >> Many thanks in advance >> Enrico >> >> >> _______________________________________________ >> PyMOL-users mailing list >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> Unsubscribe: >> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe >> >
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