Dear Pymol Users! I am working on the visualization of the ligand binding poses predicted by protein-ligand docking. Having 88 solutions I split these states into different states and then set transparency=0.8 to each of them, in order to visualize them as the "cloud" of the conformational space of the ligand predicted in docking. I also selected the best docking pose (always the first model) and colored it in Red without the transparency. The problem is that, during the visualization, on the png graph, the best docking pose looks to be on the second plane compared to others (transparent) poses. How could I always move this model on the first plane compared to other aligned ligand poses? P.S. I tried to enclose the PNG to my message but it seems that it could not pass the moderator filter ..
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