Thank you very much, Ali!! Cheers, Enrico чт, 27 янв. 2022 г. в 12:20, Ali Saad Kusay <akus8...@uni.sydney.edu.au>: > > Hi Enrico, > > You need to use the byres or br. Selection > (https://pymolwiki.org/index.php/Selection_Algebra) > > I.e: > cmd.select('br. (rep sticks & visible beyond 4 of not polymer)') > > Also, consider hiding all protein residues and showing only the ones near the > protein, i.e.: > cmd.show('sticks','br. poly within 4 of resn XXX') > ^ Where 4 is the distance and XXX should be substituted with the residue name > of the ligand > > Cheers, > > Ali > > On 27/1/22, 10:12 pm, "Enrico Martinez" <jmsstarli...@gmail.com> wrote: > > Dear Pymol Users! > I am working on the visualization of the protein-ligand contacts > identified using > preset.ligand_cartoon('pdb',_self=cmd) > Since the command also displays some residues, which are not involved > in the interactions (with the radicals located too far away) with the > ligand, I need to filter the displayed side-chains focusing only on > the important interactions. I am using a distance-based criterion for > the selection of the residues which I am going to hide. > > this is what I've already tried: > > # display visible side chains as the sticks > cmd.select('rep lines and visible and sidechain') > cmd.show('sticks', 'sele') > # select all visible sticks of the sidechains far away from the ligand > cmd.select('sidechain & (rep sticks & visible beyond 4 of not polymer)') > cmd.hide('everything', 'sele') > > the problem is that the "select" command with such syntax, always > selects the ATOMS, but not the whole side-chains. Is it possible to > hide the whole side-chain using such syntax as well as it's displayed > label? > Many thanks in advance! > Enrico > > > _______________________________________________ > PyMOL-users mailing list > Archives: > https://protect-au.mimecast.com/s/utRJClx1Nji2GrWxqIGRZsc?domain=mail-archive.com > Unsubscribe: > https://protect-au.mimecast.com/s/XwNECmO5glujXxVzLuOSHPJ?domain=sourceforge.net > >
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