Dear Pymol community, I have a question about alignment module of Pymol. I have two different pdb ids and each have about 100 amino acid long. I would like to align the specific parts of these proteins and see both how the rest of the proteins and also these specific parts superimpose with each other. In other words, if I align the proteins based on their 20-30 amino acids, I would like to first see what the RMSD is for these specific regions (20-30 aa) and then the RMSD of the rest (1-20 and 30-100) is. I truly appreciate your suggestions and guidance on this. Thank you!
Have a great week/weekend, Ecem
_______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
