Hi Blaine. Thank you for your reply. I was not clear. I meant the surface which can be generated via action -> generate -> vacuum electrostatic -> protein contact potential (local) Is there a way to access it via Python?
Thank you and best regards. Petro. On Wed, 17 May 2023 at 17:32, Mooers, Blaine H.M. (HSC) < blaine-moo...@ouhsc.edu> wrote: > Hi Petro, > > APBS is a plugin and not directly part of PyMOL. > > You can run apbs from the command line via subprocess in Python. > > https://apbs.readthedocs.io/en/latest/using/index.html > > Best regards, > > Blaine > > Blaine Mooers, Ph.D. > Associate Professor > Department of Biochemistry and Molecular Biology, College of Medicine > Director of the Laboratory of Biomolecular Structure and Function > Academic Director, Biomolecular Structure Core, COBRE in Structural Biology > Full Member, Cancer Biology Program, Stephenson Cancer Center > University of Oklahoma Health Sciences Center > > Mailing Address: > 975 NE 10th Street, BRC 466 > Oklahoma City, OK 73104-5419 > Office: 405-271-8300 Lab: 405-271-8312 > > Websites: > Faculty page: > https://basicsciences.ouhsc.edu/bmb/Faculty/bio_details/mooers-blaine-hm-phd > BSC-OKC (LBSF): > https://research.ouhsc.edu/Core-Facilities/Laboratory-of-Biomolecular-Structure-and-Function > COBRE in Structural Biology: https://www.ou.edu/structuralbiology > ------------------------------ > *From:* Petro <subscr...@khoroshyy.net> > *Sent:* Tuesday, May 16, 2023 2:19 PM > *To:* pymol-users@lists.sourceforge.net <pymol-users@lists.sourceforge.net > > > *Subject:* [EXTERNAL] [PyMOL] Generate electrostatics by Python command > > Hi. > How can I generate electrostatics using Python API? > Thanks. > Petro. >
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