Dear Shreya,
one further possibility is to create a new object using the named chains:
reinitialize
fetch 6ous
create trimer1, chain A+C+E+B+D+F
disable 6ous
alternatively, you could delete all other chains:
reinitialize
fetch 6ous
remove not chain A+C+E+B+D+F
It is usually necessary (or at least preferable) to make yourself
familiar with the PyMOL selection algebra and some basic commands to
show selected residues.
Working only with the GUI, you could use:
Menu: Display, Sequence Mode, Chain Identifiers
Menu: Display, Sequence
Next you select the chains you want to show (CTRL or Strg and left mouse
click)
Finally you use the command buttons next to the selection (sele): A,
copy to object, new
Best,
Norbert
Am 03.08.2023 um 09:57 schrieb Saurabh Gayali:
Have you tried this:
https://pymolwiki.org/index.php/Split_object
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03/08/23, 01:27:34 pm
On Thu, Aug 3, 2023 at 8:15 AM Mukhopadhyay, Shreya via PyMOL-users
<pymol-users@lists.sourceforge.net> wrote:
Public
Hello All,
I am trying to separate out two molecules(one copy for each of
RSVF F1 and F2) from one pdb (6OUS). It’s a trimeric protein bound
to a Fab.
I want to separate out RSVF1 and F2 proteins as one object from
the bound antibody, ie create one object with only chains A,C,E
and B,D,F. If you could explain the commands to use that will be
really helpful to me.
Thanks,
Shreya
Shreya Mukhopadhyay, PhD.(She/Her)
*Post Doc Fellow (Infectious Diseases and Vaccines-Discovery)*
770 Sumneytown Pike, West Point B46, 2048-C, PA 19486
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