Hello Dr. Saper,
This does appear to be a bug and I was able to reproduce the same behavior
on my Mac. Opening the same pdb repeatedly in the same window should result
in states being added, but there's no reason why PyMOL should be doing this
when double clicking on files. It seems like PyMOL is loading the
structure twice for some reason but this pattern doesn't repeat if you
continue to open the same file.
I will create a ticket to investigate further and hopefully have a fix for
this in the near future. In the meantime, you can delete the second state
using "delete_states {your object name}, 2", though I recognize this is
annoying to type each time and is not a long term solution.
Thanks for reporting this,
Thomas Stewart
On Thu, Dec 12, 2024 at 7:16 AM Mark Saper <sa...@umich.edu> wrote:
> I am running the latest PyMOL 3.1.3 on macOS 13.7,1.
>
> When I double click a .pse or .pdb file, PyMOL opens normally and displays
> the molecule of interest.
> If I think double click on another file, PyMOL opens a new window, the
> molecule displays, but now there is a seoncd state of the moleculeThe GUI
> shows the Global Frames control for switching between scenes. I also get
> this message:
>
> ObjectMolecule: Read crystal symmetry information.
>
> CmdLoad: "" appended into object "231129_EcNfo_WT_P028_9_refine_061", state 2.
>
>
> Is this a bug? Or am I doing something wrong.
>
>
> Mark
> _____________________
> *Mark A. Saper, Ph.D.*
> Visiting Professor
> Dept of Microbiology and Molecular Genetics
> Hebrew University Faculty of Medicine
>
> Associate Professor Emeritus of Biological Chemistry
> University of Michigan Medical School
>
> sa...@umich.edu | +972 52 815-0480
>
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--
Thomas Stewart | Senior Developer I | Product Manager, PyMOL
[image: Schrödinger, Inc.] <https://schrodinger.com/>
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