I usually open the second molecule after pymol has loaded first molecule by just dropping the file on the window. Afterwards I used align Command: https://pymolwiki.org/index.php/Align Super command is also useful: https://pymolwiki.org/index.php/Super
Also after loading 2 molecules you can use Align menu under plugin: [image: image.png] It has multiple algorithm for alignments. [image: image.png] Regards, Saurabh Gayali ------------------------------ *Saurabh Gayali* Business Analyst [Excelra], Former Research Scientist [IGIB] saurabh.gay...@gmail.com / +91 8800412916 <http://example.com/>Bangalore, India On Sun, Jan 12, 2025 at 10:53 AM Giuseppa Cefalu <giuseppacef...@gmail.com> wrote: > Hello, > I was wondering if there is GUI feature for loading and superimposing 2 > proteins. I would like to use pymol for students that do not have any > experience using commands. > > Thanks, > ~Giuseppa > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe >
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