Pymol by default doesn’t draw the surface for heteroatoms. To enable it: set surface_mode, 1
-- Kevin M. Jude, PhD Structural Biology Research Specialist, Garcia Lab Howard Hughes Medical Institute Stanford University School of Medicine Beckman B177, 279 Campus Drive, Stanford CA 94305 From: Andrea Smith via PyMOL-users <[email protected]> Date: Thursday, May 14, 2026 at 3:02 AM To: [email protected] <[email protected]> Subject: [PyMOL] pymol won't show surface for one residue Hi, I am using version 3.1.3.1. on Windows. I have a structure where one of the cysteines is oxidised and modelled as CSD. When I show surface for the molecule, there is no surface for CSD. Also when I select only CSD and show surface, still nothing happens. Anyone can help what to do? Thank, Andrea
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