Hi,
I'm trying to install pytables on a mac OS 10.6. I installed hdf5 v 1.8.4
with shared libraries. I then included the location of the libraries in my
LD_LIBRARY_PATH env variable, and tried to install pytables through both
easy_install and from source. Neither appears to work.
In both cases I get an error when I import tables in python:
>>> import tables
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File
"/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/tables-2.1.2-py2.6-macosx-10.3-fat.egg/tables/__init__.py",
line 56, in <module>
from tables.utilsExtension import getPyTablesVersion, getHDF5Version
ImportError:
dlopen(/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/tables-2.1.2-py2.6-macosx-10.3-fat.egg/tables/utilsExtension.so,
2): Symbol not found: _H5T_STD_I64LE_g
Referenced from:
/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/tables-2.1.2-py2.6-macosx-10.3-fat.egg/tables/utilsExtension.so
Expected in: dynamic lookup
When I build from source I get the following messages which might be
relevant:
$ python setup.py build_ext --inplace --hdf5=../hdf5-1.8.4/hdf5/
* Found numpy 1.3.0 package installed.
* Found HDF5 headers at ``../hdf5-1.8.4/hdf5/include``, library at
``../hdf5-1.8.4/hdf5/lib``.
.. WARNING:: Could not find the HDF5 runtime.
The HDF5 shared library was *not* found in the default library
paths. In case of runtime problems, please remember to install it.
* Could not find LZO 2 headers and library; disabling support for it.
* Could not find LZO 1 headers and library; disabling support for it.
* Found bzip2 headers at ``/usr/include``, library at ``/usr/lib``.
running build_ext
Does anyone know what might be going wrong? I did install hdf5, so I'm not
sure what the warning message is referring to.
Thanks a lot!
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