On 27 May 2010 00:57, Brandt Belson <bbel...@princeton.edu> wrote: > Hi again, > Thanks for your help. I followed your directions. First, I checked the file > type of python (which I installed from python.org): > $ file /Library/Frameworks/Python.framework/Versions/2.6/bin/python > /Library/Frameworks/Python.framework/Versions/2.6/bin/python: Mach-O > universal binary with 2 architectures > /Library/Frameworks/Python.framework/Versions/2.6/bin/python (for > architecture ppc): Mach-O executable ppc > /Library/Frameworks/Python.framework/Versions/2.6/bin/python (for > architecture i386): Mach-O executable i386 > I assumed this was the first case you mentioned. > I then did export CC=gcc-4.0 CFLAGS='-arch i386' and LDFLAGS='-arch i386' > Then I ran hdf5 configure with ./configure --enable-shared > --prefix=/usr/local > This gave no errors, so I did make and make install, and everything appeared > to work fine. > I checked the arch of hdf5's libraries: > $ file /usr/local/lib/libhdf5.dylib > /usr/local/lib/libhdf5.dylib: Mach-O dynamically linked shared library i386
That looks good so far > I then tried installing pytables 4 different ways: the stable release from > easy_install and from source, and the newest trunk from easy_install and > from source. None of these worked. That is bizarre, the trunk isn't working for other reasons now, but 2.1.2 or 2.2b3 should work. So I downloaded and installed python from python.org and did the following: export MACOSX_DEPLOYMENT_TARGET=10.6 (this may not be necessary, but it removes some warnings) wget http://pypi.python.org/packages/source/s/setuptools/setuptools-0.6c11.tar.gz tar xzf setuptools-0.6c11.tar.gz cd setuptools-0.6c11 python setup.py install easy_install numpy easy_install numexpr (yes, do them one at a time and ignore the numpy.distutils errors) easy_install tables (ignore any lib64 and ppc warnings) python -c "import tables; tables.test()" -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= PyTables version: 2.1.2 HDF5 version: 1.8.4-patch1 NumPy version: 1.4.1 Zlib version: 1.2.3 LZO version: 2.03 (Apr 30 2008) BZIP2 version: 1.0.5 (10-Dec-2007) Python version: 2.6.5 (r265:79359, Mar 24 2010, 01:32:55) [GCC 4.0.1 (Apple Inc. build 5493)] Platform: darwin-i386 Byte-ordering: little -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Performing only a light (yet comprehensive) subset of the test suite. If you want a more complete test, try passing the --heavy flag to this script (or set the 'heavy' parameter in case you are using tables.test() call). The whole suite will take more than 2 minutes to complete on a relatively modern CPU and around 80 MB of main memory. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Skipping Numeric test suite. Skipping numarray test suite. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= .......................................................................................................................................................................[snip]................. ---------------------------------------------------------------------- Ran 6522 tests in 47.013s OK Give that a try, making sure you still have CC=gcc-4.0 set. Otherwise it might be some other weirdness in you build system. Tony P.S. to satisfy yourself that the numpy warnings don't amount to much: easy_install nose python -c "import numpy; numpy.test()" ------------------------------------------------------------------------------ _______________________________________________ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
