Hi, I just installed pytables from the ubuntu Maverick Meerkat package python-tables and ran the test. Unfortunately, it fails. Is there something wrong in my installation? Is the ubuntu package buggy? Should I report this in a bug tracking system, at pytables or at ubuntu?
I see some pytables-related bugs in the ubuntu package management, but those appear to be different issues. I get the same error on a similar system running Lucid Lynx. It works fine at home, where I also run Lucid Lynx. stdout and sterr of tables.test() on a system where it fails: included below stdout of tables.test(verbose=True, heavy=True): http://www.sat.ltu.se/~gerrit/heavytest.stdout.gz (compressed to save space) stderr of tables.test(verbose=True, heavy=True): http://www.sat.ltu.se/~gerrit/heavytest.stderr stdout and stderr of tables.test() on a system where it succeeds: included below This is a 64-bit system with 8 cores and 16 GiB RAM. Please let me know in case more information about my configuration is needed. >>> tables.test() -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= PyTables version: 2.1.2 HDF5 version: 1.8.4 NumPy version: 1.3.0 Zlib version: 1.2.3.4 LZO version: 2.03 (Apr 30 2008) BZIP2 version: 1.0.5 (10-Dec-2007) Python version: 2.6.6 (r266:84292, Sep 15 2010, 16:22:56) [GCC 4.4.5] Platform: linux2-x86_64 Byte-ordering: little -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Performing only a light (yet comprehensive) subset of the test suite. If you want a more complete test, try passing the --heavy flag to this script (or set the 'heavy' parameter in case you are using tables.test() call). The whole suite will take more than 2 minutes to complete on a relatively modern CPU and around 80 MB of main memory. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Skipping Numeric test suite. Skipping numarray test suite. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= 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====================================================================== ERROR: None (tables.netcdf3.tests.test_netcdf3.NetCDFFileTestCase2) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.6/dist-packages/tables/tests/common.py", line 248, in newmethod return oldmethod(self, *args, **kwargs) File "/usr/lib/python2.6/dist-packages/tables/netcdf3/tests/test_netcdf3.py", line 165, in test_h5tonc f.close() File "/usr/lib/python2.6/dist-packages/tables/netcdf3/__init__.py", line 301, in close self._NetCDF_h5file.close() File "/usr/lib/python2.6/dist-packages/tables/file.py", line 1985, in close self.root._f_close() File "/usr/lib/python2.6/dist-packages/tables/group.py", line 948, in _f_close self._g_close() File "/usr/lib/python2.6/dist-packages/tables/group.py", line 915, in _g_close self._g_closeGroup() File "hdf5Extension.pyx", line 691, in tables.hdf5Extension.Group._g_closeGroup HDF5ExtError: Problems closing the Group / ====================================================================== FAIL: None (tables.tests.test_basics.OldFlavorTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.6/dist-packages/tables/tests/common.py", line 248, in newmethod return oldmethod(self, *args, **kwargs) File "/usr/lib/python2.6/dist-packages/tables/tests/test_basics.py", line 2202, in test self.assert_(common.allequal(node_data, data, new_flavor)) AssertionError ---------------------------------------------------------------------- Ran 6523 tests in 30.409s FAILED (failures=1, errors=1) >>> tables.print_versions() -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= PyTables version: 2.1.2 HDF5 version: 1.8.4 NumPy version: 1.3.0 Zlib version: 1.2.3.4 LZO version: 2.03 (Apr 30 2008) BZIP2 version: 1.0.5 (10-Dec-2007) Python version: 2.6.6 (r266:84292, Sep 15 2010, 16:22:56) [GCC 4.4.5] Platform: linux2-x86_64 Byte-ordering: little -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= (different system) >>> tables.test() -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= PyTables version: 2.1.2 HDF5 version: 1.8.4 NumPy version: 1.3.0 Zlib version: 1.2.3.3 LZO version: 2.03 (Apr 30 2008) BZIP2 version: 1.0.5 (10-Dec-2007) Python version: 2.6.5 (r265:79063, Apr 16 2010, 13:57:41) [GCC 4.4.3] Platform: linux2-x86_64 Byte-ordering: little -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Performing only a light (yet comprehensive) subset of the test suite. If you want a more complete test, try passing the --heavy flag to this script (or set the 'heavy' parameter in case you are using tables.test() call). The whole suite will take more than 2 minutes to complete on a relatively modern CPU and around 80 MB of main memory. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Skipping Numeric test suite. Skipping numarray test suite. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= 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---------------------------------------------------------------------- Ran 6522 tests in 39.370s OK regards, Gerrit. ------------------------------------------------------------------------------ Download new Adobe(R) Flash(R) Builder(TM) 4 The new Adobe(R) Flex(R) 4 and Flash(R) Builder(TM) 4 (formerly Flex(R) Builder(TM)) enable the development of rich applications that run across multiple browsers and platforms. 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