(sorry for replying to my own post)
Hi,
On 19 October 2010 16:16, Gerrit Holl <gerrit.h...@ltu.se> wrote:
> since I had problems with tables.test() when installing from the
> ubuntu package python-tables, I decided to try to install from source
> instead. Compilation succesful, but the test hangs, now with a
> different problem.
Sorry for not paying attention. This is a known issue in numexpr. I
checked out the latest and it doesn't deadlock anymore. If this makes
tests hang I guess numexpr deserves a new release.
Still got the other error though:
$ PYTHONPATH=.:$PYTHONPATH python -c "import tables; tables.test()"
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
PyTables version: 2.2.1.dev
HDF5 version: 1.8.4-patch1
NumPy version: 1.3.0
Numexpr version: 1.5.dev245 (not using Intel's VML/MKL)
Zlib version: 1.2.3.4 (in Python interpreter)
Blosc version: 1.1.1 ($Date:: 2010-10-01 #$)
Cython version: 0.13
Python version: 2.6.6 (r266:84292, Sep 15 2010, 16:22:56)
[GCC 4.4.5]
Platform: linux2-x86_64
Byte-ordering: little
Detected cores: 8
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Performing only a light (yet comprehensive) subset of the test suite.
If you want a more complete test, try passing the --heavy flag to this script
(or set the 'heavy' parameter in case you are using tables.test() call).
The whole suite will take more than 2 minutes to complete on a relatively
modern CPU and around 80 MB of main memory.
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
tables/filters.py:264: FiltersWarning: compression library ``bzip2``
is not available; using ``zlib`` instead
% (complib, default_complib), FiltersWarning )
tables/filters.py:264: FiltersWarning: compression library ``lzo`` is
not available; using ``zlib`` instead
% (complib, default_complib), FiltersWarning )
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................E....
======================================================================
ERROR: None (tables.netcdf3.tests.test_netcdf3.NetCDFFileTestCase2)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/netcdf3/tests/test_netcdf3.py", line 165, in test_h5tonc
f.close()
File "tables/netcdf3/__init__.py", line 301, in close
self._NetCDF_h5file.close()
File "tables/file.py", line 2127, in close
self.root._f_close()
File "tables/group.py", line 982, in _f_close
self._g_close()
File "tables/group.py", line 949, in _g_close
self._g_closeGroup()
File "hdf5Extension.pyx", line 699, in
tables.hdf5Extension.Group._g_closeGroup (tables/hdf5Extension.c:6028)
HDF5ExtError: Problems closing the Group /
----------------------------------------------------------------------
Ran 2946 tests in 41.257s
FAILED (errors=1)
Closing remaining open files: /tmp/tmp3sPl8J.h5... Error in
atexit._run_exitfuncs:
Traceback (most recent call last):
File "/usr/lib/python2.6/atexit.py", line 24, in _run_exitfuncs
func(*targs, **kargs)
File "tables/file.py", line 2323, in close_open_files
fileh.close()
File "tables/file.py", line 2127, in close
self.root._f_close()
File "tables/group.py", line 982, in _f_close
self._g_close()
File "tables/group.py", line 949, in _g_close
self._g_closeGroup()
File "hdf5Extension.pyx", line 699, in
tables.hdf5Extension.Group._g_closeGroup (tables/hdf5Extension.c:6028)
HDF5ExtError: Problems closing the Group /
Error in sys.exitfunc:
Traceback (most recent call last):
File "/usr/lib/python2.6/atexit.py", line 24, in _run_exitfuncs
func(*targs, **kargs)
File "tables/file.py", line 2323, in close_open_files
fileh.close()
File "tables/file.py", line 2127, in close
self.root._f_close()
File "tables/group.py", line 982, in _f_close
self._g_close()
File "tables/group.py", line 949, in _g_close
self._g_closeGroup()
File "hdf5Extension.pyx", line 699, in
tables.hdf5Extension.Group._g_closeGroup (tables/hdf5Extension.c:6028)
tables.exceptions.HDF5ExtError: Problems closing the Group /
Gerrit.
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