Did you manage to find a solution? I have the same exact problem. USBVM sees 
usb fine and pass it to AppVM without a problem but the yubikey simply doesnt 
do anything inside the Appvm even the yubico personalization tool does not 
detect a yubikey connected even though qvm-usb shows that the Yubikey is 
properly connected and lsusb inside the VM also shows Yubico connected.

regards,
Miguel



On Wednesday, January 4, 2017 at 4:01:12 PM UTC+1, @LeeteqXV (Twitter) wrote:
> I have followed this guide: https://www.qubes-os.org/doc/usb/
> 
> And I can see the Yubikey, and attach it to the AppVM, then see that it 
> is attached to the AppVM with the qvm-usb command.
> 
> However, nothing happens inside the AppVM when I push the Yubikey button 
> to send the password to the field with the cursor, neither in a browser 
> window nor in Gedit.
> 
> As far as I know, the Yubikeys are identifying themselves as a 100% 
> standard keyboard without the need for any driver on any system, so the 
> push of its button should be understood by the Qube to be normal 
> keyboard key presses.
> 
> What may be wrong?
> 
> Regards,
> 
> @LeeteqXV

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