On Sun, Apr 12, 2020 at 08:20:23AM -0700, [email protected] wrote:
> Hello Qubes community,
> 
> I'm only a short-term user of Qubes-OS - and - I'm still struggling with 
> all the details you have to know & understand.
> 
> *How could it be explained, that a package, which was manually installed 
> into an freshly created AppVM, get's removed?*
> 
> I've tried to find an answer or explanation both in the Qubes - as well as 
> - Fedora documentation myself, unfortunately without success.
> 
> Here's the timeline of the activities I performed in that particular AppVM:
> 
> ###
> 
>     2020-04-10 ~ 12:45 - Install PHP & Composer
> 
>     2020-04-10 ~ 15:00 - Resolve the problem using the built-in web server
> 
>     <Next day>
> 
>     2020-04-11 ~ 16:10 - Read & execute the 'Installing Yii' section in 
> 'The Definitive Guide to Yii2' 
> 
>     * Unable to install Yii2, since PHP & Composer are no longer found :-(
> 
>     2020-04-11 ~ 16:50 - Analyze <?what?>
> 
>     * I guess it's time to learn / read more about 'DNF' ...
> 
> ###
> 
> I did not further touch that AppVM, beside running a few DNF commands in 
> order to understand the status a bit better ...
> 
> Any ideas, what might have happened to this Fedora 30-based AppVM - or - 
> any pointers, what I could check/ do in order to resolve this issue?
> 
> With kind regards,
> 
> VR

Welcome to Qubes

When you use an appVM it is based on a template - almost all the file
system is derived from the template except for files and directories
stored in /rw which includes /home.
This means that when you close down the qube and restart it you get a
clean copy of the rest of the filesystem but any changes in /home/user
will be maintained.
If you install applications in the qube, they will (in most cases)
disappear on a reboot.
To avoid this you need to install the application in the template used
by the qube.

This is a core feature in Qubes and you can read about it at
https://www.qubes-os.org/doc/template-implementation

unman

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