Following the instructions, my upgrade ended with this message:
The following packages were automatically installed and are no longer required:
  acl anon-iceweasel-warning apt-file binaries-freedom bsdmainutils bsdtar
  command-not-found cpp-8 curl-scripts dctrl-tools dkms firejail
  firejail-profiles firetools fonts-droid-fallback fonts-noto-mono
  gpl-sources-download grub2-common initramfs-tools initramfs-tools-core
  klibc-utils libapt-pkg-perl libasan5 libavdevice58 libavfilter7
  libbasicusageenvironment1 libbind9-161 libboost-iostreams1.67.0
  libboost-system1.67.0 libbotan-2-9 libc-ares2 libcdio-cdda2
libcdio-paranoia2 libcdio18 libcdio19 libcodec2-0.8.1 libcroco3 libcrypto++6
  libcrystalhd3 libcupsfilters1 libcupsimage2 libcwidget3v5 libdc1394-22
  libdns1104 libdns1110 libdouble-conversion1 libdvdread4 libebml4v5
libegl1-mesa libenchant1c2a libev4 libevent-2.1-6 libexo-1-0 libexo-helpers
  libexporter-tiny-perl libfluidsynth1 libgroupsock8 libgs9 libgs9-common
libgssdp-1.0-3 libgupnp-1.0-4 libhavege1 libicu63 libijs-0.35 libilmbase23
  libirs161 libisc1100 libisc1105 libisccc161 libisccfg163 libisl19
  libjsoncpp1 libkf5sonnet5-data libkf5sonnetcore5 libkf5sonnetui5 libklibc
  liblist-moreutils-perl liblist-moreutils-xs-perl liblivemedia64 libllvm7
  liblwres161 libmatroska6v5 libmicrodns0 libmpdec2 libmpx2 libmysofa0
libnfs12 libopenexr23 libperl5.28 libpgm-5.2-0 libpipewire-0.2-1 libplacebo7
  libpocketsphinx3 libpoppler82 libpotrace0 libprotobuf-lite17 libpython2.7
  libpython3.7 libpython3.7-minimal libpython3.7-stdlib libreadline7
  libregexp-assemble-perl librubberband2 libsphinxbase3 libsqlcipher0
  libtoxcore2 libusageenvironment3 libvidstab1.1 libvpx5 libx264-155
  libx265-165 libxcb-util0 libxdot4 linux-base onionshare perl-modules-5.28
  python-apt-common python-pkg-resources python3-apt python3-asn1crypto
  python3-flask python3-flask-httpauth python3-gevent python3-greenlet
python3-guimessages python3-itsdangerous python3-jinja2 python3-markupsafe python3-psutil python3-pycryptodome python3-simplegeneric python3-werkzeug python3-zope.event python3.7-minimal qtox qubes-core-agent-passwordless-root
  qubes-core-agent-thunar qubes-input-proxy-sender qubes-kernel-vm-support
  qubes-usb-proxy rsyslog scurl telnet tor-ctrl usb.ids usbutils vim-common
  vim-tiny virt-what
Use 'sudo apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+ true 'INFO: Setting a list of traditional dummy packages to automatically
installed so these can be removed the next time the user runs apt autoremove.' + apt-mark auto e2fslibs gnupg2 libcomerr2 mime-support libgdk-pixbuf2.0-0 libiptc0 cryptsetup-run
+ true 'INFO: Running sanity test...'
+ dpkg-noninteractive --audit
+ true 'INFO: Running sanity test...'
+ dpkg-noninteractive --configure -a
+ true 'INFO: Restart whonix-legacy service...'
+ service whonix-legacy restart
+ true 'INFO: Running sanity test...'
+ dpkg-noninteractive --audit
+ true 'INFO: Running sanity test...'
+ dpkg-noninteractive --configure -a
+ true 'INFO: OK. (release-upgrade version: 1.4) Release upgrade success.'

I'm wondering whether those qubes packages may actually be removed.
I'm afraid to break my system when doing so.


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