On Tue, May 31, 2022 at 11:54:24PM -0700, Viktor Ransmayr wrote:
I've performed the same task today - and - the same 14 packages were
removed again ...

So it's clear now that something went wrong with my 'in-place upgrade' !

Anything that I could try, beside a completely fresh installation of Qubes
OS R4.1 ?

I've had similar issues:
https://github.com/QubesOS/qubes-issues/issues/7503

Maybe try some of the ideas suggested there?

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