On Monday 12 July 2010 10:29:30 lI wrote: > Greetings, > > I have a computer with the following setup: > 1)cblfs (pure 64-bit (amd64) linux), kernel2.6.34 gcc4.4.2 > 2)R-2.11.1 > > I compiled R with BLAS and lapack using the switched ( --with-blas="- > lpthread -latlas -lfptf77blas" > --with-lapack="-llapack -lcblas" ). > (( http://cran.r-project.org/doc/manuals/R-admin.html#Linear-algebra) ) > > Prior to compiling R-2.11.1 > sh conigure --help gave options including the following > SHLIB_LD command for linking shared libraries > which contain object files from a C or Fortran compiler > only SHLIB_LDFLAGS special flags used by SHLIB_LD > SHLIB_CXXLDFLAGS special flags used by SHLIB_CXXLD > SHLIB_FCD command for linking shared libraries which contain object files > from the Fortran 95 compiler > SHLIB_FCLDFLAGS special flags used by SHLIB_FCLD > > > I did not know what to set for these and accepted whatever the defaults > were. I ended up with shared-libraries which are as follows:- > > $R_HOME/lib/{libRblas.so,libRlapack.so } i.e. with the prefix 'lib' > and the following shared-libraries without the 'lib' prefix. > > $R_HOME/modules/{R_X11.so,internet.so,lapack.so,vfonts.so } > $R_HOME/library/cluster/libs/cluster.so > $R_HOME/library/foreign/libs/foreign.so > $R_HOME/library/grDevices/libs/grDevices.so > $R_HOME/library/grid/libs/grid.so > $R_HOME/library/KernSmooth/libs/KernSmooth.so > $R_HOME/library/lattice/libs/lattice.so > $R_HOME/library/MASS/libs/MASS.so > $R_HOME/library/Matrix/libs/Matrix.so > $R_HOME/library/methods/libs/methods.so > $R_HOME/library/mgcv/libs/mgcv.so > $R_HOME/library/nlme/libs/nlme.so > $R_HOME/library/nnet/libs/nnet.so > $R_HOME/library/rpart/libs/rpart.so > $R_HOME/library/spatial/libs/spatial.so > $R_HOME/library/splines/libs/splines.so > $R_HOME/library/stats/libs/stats.so > $R_HOME/library/survival/libs/survival.so > $R_HOME/library/tools/libs/tools.so > > > In linux builds the linker usually looks for libs with the 'lib' prefix. > In this installation all the libraries > ---in $R_HOME/modules > ---in $R_HOME/library/patha/to/whatevr > > do not have the 'lib' prefix. > > QUESTION: > A) does any on list know SHLIB_LD SHLIB_LDFLAGS SHLIB_CXXLDFLAGS > SHLIB_FCD SHLIB_FCLDFLAGS settings for compiling R and do these > result in so libs with the 'lib' prefix? > B) If all of A) is negative what is there to be done to to enable > generation libraries in $R_HOME/modules $R_HOME/library/~ with the 'lib' > prefix? >
I forgot to add my configure/make options. These were:- ######################## export BUILD64="-m64" sh configure \ CC="gcc $BUILD64" \ CXX="g++ $BUILD64" \ F77="gfortran $BUILD64" \ FC="gfortran $BUILD64" \ JAVA_HOME=$JAVA_HOME \ LIBnn=lib64 \ CPPFLAGS="-I$ATLAS_HOME/include -I/opt/acml4.4.0/gfortran64_mp/include - I/opt/acml4.4.0/gfortran64/include -I/usr/local/numerics/include" \ LDFLAGS="-L$ATLAS_HOME/lib -L/opt/acml4.4.0/gfortran64_mp/lib - L/usr/local/numerics/lib -L/usr/lib" \ --prefix=/opt/TEST/R-2.11.1 \ --x-includes=$XORG_PREFIX/include \ --x-libraries=$XORG_PREFIX/lib \ --with-tcl-config=/usr/lib \ --with-tk-config=/usr/lib \ --with-system-zlib=/usr \ --with-system-bzlib=/usr \ --with-system-pcre=/usr \ --with-x \ --with-libpth-prefix=/usr \ --with-libintl-prefix=/usr \ --with-blas="-lpthread -latlas -lfptf77blas" \ --with-lapack="-llapack -lcblas" \ --enable-R-shlib \ --enable-BLAS-shlib ################ The sources compiled trouble-free. with 'make' as normal user. I then ran 'make install' as super-user and int installed in the prefix as set.. A reply to the following questions would be much appreciateed:- QUESTION: A) does any on list know SHLIB_LD SHLIB_LDFLAGS SHLIB_CXXLDFLAGS SHLIB_FCD SHLIB_FCLDFLAGS settings for compiling R and do these result in so libs with the 'lib' prefix? B) If all of A) is negative what is there to be done to enable generation of shared-libraries in $R_HOME/modules/ and $R_HOME/library/~ directories/sub-directories with the 'lib' prefix? sincerely luxInteg ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
