I have a confusing error from R CMD check that I don't get when running the
example manually by hand.
In the \examples section of an Rd file, I create a GRanges object, then I call
a function with the GRanges object, whose first 2 lines are
require(GenomicRanges)
annoDF <- as.data.frame(anno) # anno is the GRanges object.
and that second line gives:
Error in as.data.frame.default(anno) :
cannot coerce class 'structure("GRanges", package = "GenomicRanges")' into a
data.frame
Calls: annoGR2DF ... annoGR2DF -> .local -> as.data.frame ->
as.data.frame.default
I have GenomicRanges listed in my Imports: field, and IRanges in the Suggests:
of the DESCRIPTION file (it's require()d elsewhere). I'm trying to avoid
putting packages in Depends: , so my package loads fast. Any tips of what I'm
not understanding properly ?
Thanks.
--------------------------------------
Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia
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