Roger,
This seems to be related to a recent bug in the methods package. Try
library(SparseM)
getGenerics(2)
and you will see that it is wrong, and most of the base generics are
being attributed to SparseM. I understand the same bug is causing
problems in undoc().
Brian
On Sun, 24 Aug 2003, Roger Koenker wrote:
> I have another S4 methods query -- this time about undocumented objects:
> I'm now getting the following warning from R CMD check SparseM:
>
> * checking for missing documentation entries ... WARNING
> Undocumented code objects:
> %x% as.matrix diag diag<- diff t
> Undocumented S4 methods:
> \S4method{coerce}{ANY,array} \S4method{coerce}{ANY,call}
> \S4method{coerce}{ANY,character} \S4method{coerce}{ANY,complex}
> \S4method{coerce}{ANY,environment} \S4method{coerce}{ANY,expression}
> \S4method{coerce}{ANY,function} \S4method{coerce}{ANY,integer}
> \S4method{coerce}{ANY,list} \S4method{coerce}{ANY,logical}
> \S4method{coerce}{ANY,matrix} \S4method{coerce}{ANY,name}
> \S4method{coerce}{ANY,numeric} \S4method{coerce}{ANY,single}
> \S4method{coerce}{ANY,ts} \S4method{coerce}{ANY,vector}
> \S4method{coerce}{ANY,NULL}
> \S4method{coerce}{vector,matrix.diag.csr}
> \S4method{diff}{matrix.csr} \S4method{initialize}{traceable}
> \S4method{initialize}{signature} \S4method{initialize}{environment}
>
> A couple of these are directly related to the package, but the rest
> seem to be items that I wouldn't have thought that I should be responsible
> for documenting. I'm wondering whether the coerce items are related to
> my earlier query. Even supposing that they were due to some blunder
> of mine, I'm still puzzled by the initialize items which were present
> even before I began to mess with my new setClass strategy. Again,
> many thanks for any suggestions.
--
Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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