I've been having problems building vignettes in bioconductor packages with R-devel. Turns out that Rdevel/share/texmf/hyperref.cfg wants Blue and Red predefined, when only blue and red are defined (as of rsync Rdevel, Sept 10th). This is on a Debian unstable system (Sept 9th version). Might not apply to all other tetex systems. Seems to have bitten the bioconductor build system, though.
Symptom: 512$ R CMD build --force Biobase * checking for file 'Biobase/DESCRIPTION' ... OK * preparing 'Biobase': * checking whether 'INDEX' is up-to-date ... OK * creating vignettes ... ERROR /usr/lib/R/bin/texi2dvi: pdflatex exited with bad status, quitting. /usr/lib/R/bin/texi2dvi: see Bioconductor.log for errors. Error in buildVignettes(dir = ".") : running texi2dvi on Bioconductor.tex failed Execution halted Change produces: 517$ R CMD build --force Biobase * checking for file 'Biobase/DESCRIPTION' ... OK * preparing 'Biobase': * checking whether 'INDEX' is up-to-date ... OK * creating vignettes ... OK * removing junk files * building 'Biobase_1.3.31.tar.gz' YMMV. best, -tony -- A.J. Rossini [EMAIL PROTECTED] http://www.analytics.washington.edu/ Biomedical and Health Informatics University of Washington Biostatistics, SCHARP/HVTN Fred Hutchinson Cancer Research Center UW : FAX=206-543-3461 | moving soon to a permanent office FHCRC: 206-667-7025 FAX=206-667-4812 | Voicemail is pretty sketchy/use Email CONFIDENTIALITY NOTICE: This e-mail message and any attachme...{{dropped}} ______________________________________________ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-devel
