[Rd] make check failure -- R 2.1.0 Windows XP SP2

Wed, 20 Apr 2005 07:50:26 -0700

I compiled R 2.1.0 under Windows XP SP2 as a preliminary to rebuilding a custom package for use with R 2.1.0. The compile completed successfully, and I was able to run demo(graphics) successfully. But make check and make check-recommended fail.

> version
        _
platform i386-pc-mingw32
arch     i386
os       mingw32
system   i386, mingw32
status
major    2
minor    1.0
year     2005
month    04
day      18
language R


I downloaded the R source code and the tools on Tuesday morning, 19-Apr-2005. I carefully followed the directions in the R-2.1.0/doc/html/R-admin.html document and the directions at http://www.murdoch-sutherland.com/Rtools/. I used the Unix tools from http://www.murdoch-sutherland.com/Rtools/tools.zip and the MinGW compilers, MinGW-3.2.0-rc-3 (gcc 3.4.2) with the fixed f771.exe compiler from http://www.stats.ox.ac.uk/pub/RWin/gcc-3.4.2-fix/f771.exe.

Make check fails with the following error:


running code in 'd-p-q-r-tests.R' ...OK
comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ...386,387c386,387
< [7,] 7 -1.279898e-12 -1.279813e-12 -27.384307 -27.384307
< [8,] 8 -6.991040e-16 -6.220961e-16 -35.013437 -35.013437
---
> [7,] 7 -1.279865e-12 -1.279813e-12 -27.384307 -27.384307
> [8,] 8 -6.661338e-16 -6.220961e-16 -35.013437 -35.013437
932,940c932
< [1] "TRUE"
< [2] "TRUE"
< [3] "TRUE"
< [4] "TRUE"
< [5] "TRUE"
< [6] "TRUE"
< [7] "`is.NA' value mismatches: 1 in current, 0 in target"
< Warning message:
< NaNs produced in: pgamma(q, shape, scale, lower.tail, log.p)
---
> [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE
951c943
< [1] "Mean scaled difference: 7.710642e-05"
---
> [1] TRUE
make[3]: *** [d-p-q-r-tests.Rout] Error 1
make[2]: *** [test-Specific] Error 2
make[1]: *** [test-all-basics] Error 1
make: [test-Basic] Error 2 (ignored)



After building the recommended packages and then running make check-recommended, I got the following error:


C:\RTools\src\R-2.1.0\src\gnuwin32>make check-recommended
-------- Testing package boot --------
Massaging examples into 'boot-Ex.R' ...
Running examples in 'boot-Ex.R' ...
-------- Testing package cluster --------
Massaging examples into 'cluster-Ex.R' ...
Running examples in 'cluster-Ex.R' ...
Running specific tests
Running `agnes-ex.R'
Comparing `agnes-ex.Rout' to `agnes-ex.Rout.save' ...552c552
< [9] 2.0000 9.0000 6.0000 32.1172 10.0000 8.0000 16.0000 27.9063
---
> [9] 2.0000 9.0000 6.0000 32.1172 10.0000 8.0000 16.0000 27.9062
554c554
< [25] 4.0000 5.5000 5.0000 22.3438 5.0000 12.5000 23.7813 8.0000
---
> [25] 4.0000 5.5000 5.0000 22.3438 5.0000 12.5000 23.7812 8.0000
559c559
< [65] 5.0000 19.1250 2.0000 6.0000 10.5000 4.0000 15.0000 41.5313
---
> [65] 5.0000 19.1250 2.0000 6.0000 10.5000 4.0000 15.0000 41.5312
OK
Running `clara-NAs.R'
Comparing `clara-NAs.Rout' to `clara-NAs.Rout.save' ...36,47c36,47
< 6 NaN NaN NaN NaN NaN
< 7 40 45 12 56 65 NaN
< 8 8 21 46 52 33 NaN 34
< 9 23 18 64 41 22 NaN 63 29
< 10 19 30 42 61 44 NaN 33 13 42
< 11 165 178 270 209 190 NaN 181 157 168 148
< 12 169 182 244 213 194 NaN 185 161 172 152 30
< 13 155 168 248 199 180 NaN 171 147 158 138 12 18
< 14 208 216 252 236 208 NaN 264 206 188 210 18 8 4
< 15 214 222 258 242 214 NaN 270 212 194 216 12 14 10 6
< 16 157 170 260 201 182 NaN 173 149 160 140 8 28 10 8 2
< 17 171 184 246 215 196 NaN 187 163 174 154 30 2 18 6 12 28
---
> 6 NA NA NA NA NA
> 7 40 45 12 56 65 NA
> 8 8 21 46 52 33 NA 34
> 9 23 18 64 41 22 NA 63 29
> 10 19 30 42 61 44 NA 33 13 42
> 11 165 178 270 209 190 NA 181 157 168 148
> 12 169 182 244 213 194 NA 185 161 172 152 30
> 13 155 168 248 199 180 NA 171 147 158 138 12 18
> 14 208 216 252 236 208 NA 264 206 188 210 18 8 4
> 15 214 222 258 242 214 NA 270 212 194 216 12 14 10 6
> 16 157 170 260 201 182 NA 173 149 160 140 8 28 10 8 2
> 17 171 184 246 215 196 NA 187 163 174 154 30 2 18 6 12 28
50c50
< 2.00 27.25 147.50 114.60 188.50 270.00 16.00
---
> 2.00 27.25 147.50 114.50 188.50 270.00 16.00
OK
Running `clara-ex.R'
Running `clara.R'
Comparing `clara.Rout' to `clara.Rout.save' ...OK
Running `clusplot-out.R'
Comparing `clusplot-out.Rout' to `clusplot-out.Rout.save' ...26,28c26,28
< [1,] 0.0000 NaN 166.9258
< [2,] NaN 0 NaN
< [3,] 166.9258 NaN 0.0000
---
> [1,] 0.0000 NA 166.9258
> [2,] NA 0 NA
> [3,] 166.9258 NA 0.0000
35,38c35,38
< [1,] 0.0000 NaN 146.3222 291.3211
< [2,] NaN 0 NaN NaN
< [3,] 146.3222 NaN 0.0000 NaN
< [4,] 291.3211 NaN NaN 0.0000
---
> [1,] 0.0000 NA 146.3222 291.3211
> [2,] NA 0 NA NA
> [3,] 146.3222 NA 0.0000 NA
> [4,] 291.3211 NA NA 0.0000
62,63c62,63
< [2,] 1.433071 0.000000 NaN
< [3,] 2.851715 NaN 0.000000
---
> [2,] 1.433071 0.000000 NA
> [3,] 2.851715 NA 0.000000
71,73c71,73
< [2,] 2.241570 0.00000 NaN NaN
< [3,] 1.634033 NaN 0.0000000 0.9461858
< [4,] 3.094589 NaN 0.9461858 0.0000000
---
> [2,] 2.241570 0.00000 NA NA
> [3,] 1.634033 NA 0.0000000 0.9461858
> [4,] 3.094589 NA 0.9461858 0.0000000
81,83c81,83
< [2,] 1.989916 0.0000000 NaN NaN 0.94713417
< [3,] 1.552387 NaN 0.000000 1.17348334 2.22769309
< [4,] 3.115161 NaN 1.173483 0.00000000 0.04539385
---
> [2,] 1.989916 0.0000000 NA NA 0.94713417
> [3,] 1.552387 NA 0.000000 1.17348334 2.22769309
> [4,] 3.115161 NA 1.173483 0.00000000 0.04539385
OK
Running `daisy-ex.R'
make[2]: *** [daisy-ex.Rout] Error 1
make[1]: *** [tests] Error 2
make: *** [pkgcheck-cluster] Error 2

--
Conrad Halling
[EMAIL PROTECTED]

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