CRAN (and crantastic) updates this week New packages ------------
* appell (0.0-3) Maintainer: Daniel Sabanes Bove Author(s): Daniel Sabanes Bove <daniel.sabanesb...@ifspm.uzh.ch> with contributions by F. D. Colavecchia, R. C. Forrey, G. Gasaneo, N. L. J. Michel, L. F. Shampine, M. V. Stoitsov and H. A. Watts. License: GPL (>= 3) http://crantastic.org/packages/appell This package wraps Fortran code by F. D. Colavecchia and G. Gasaneo for computing the Appell's F1 hypergeometric function. Their program uses Fortran code by L. F. Shampine and H. A. Watts. Moreover, the hypergeometric function with complex arguments is computed with Fortran code by N. L. J. Michel and M. V. Stoitsov or with Fortran code by R. C. Forrey. See the function documentations for the references and please cite them accordingly. * bayesPop (0.2-2) Maintainer: Hana Sevcikova Author(s): Hana Sevcikova, Adrian Raftery License: GPL (>= 2) http://crantastic.org/packages/bayesPop The package allows to generate population projections for all countries of the world using several probabilistic components, such as total fertility rate (TFR) and life expectancy. * cec2005benchmark (1.0.0) Maintainer: Yasser González-Fernández Author(s): Yasser González-Fernández <ygonzalezfernan...@gmail.com> and Marta Soto <mr...@icimaf.cu> License: GPL (>= 3) http://crantastic.org/packages/cec2005benchmark This package is a wrapper for the C implementation of the 25 benchmark functions for the CEC 2005 Special Session on Real-Parameter Optimization. The original C code by Santosh Tiwari and related documentation are available at http://www.ntu.edu.sg/home/EPNSugan/. * compound.Cox (1.0) Maintainer: Takeshi Emura, Graduate Institute of Statistics, National Central University, Taiwan Author(s): Takeshi Emura & Yi-Hau Chen License: GPL-2 http://crantastic.org/packages/compound-Cox Calculate regression coefficients and their standard errors under the Cox proportional hazard model with the large number of covariates. * dgmb (1.0) Maintainer: Alba Martinez-Ruiz Author(s): Alba Martinez-Ruiz <amart...@ucsc.cl> and Claudia Martinez-Araneda <cmarti...@ucsc.cl> License: GPL (>= 2) http://crantastic.org/packages/dgmb Random data generation for PLS structural models. * diffEq (1.0) Maintainer: Karline Soetaert Author(s): Karline Soetaert <karline.soeta...@nioz.nl> License: GPL http://crantastic.org/packages/diffEq Functions and examples from the book Solving Differential Equations in R by Karline Soetaert, Jeff R Cash and Francesca Mazzia. Springer, 2012. * dkDNA (0.1.0) Maintainer: Gota Morota Author(s): Gota Morota and Masanori Koyama License: GPL-2 http://crantastic.org/packages/dkDNA Compute diffusion kernels on DNA polymorphisms, including SNP and bi-allelic genotypes. * frmqa (0.1-0) Maintainer: Thanh T. Tran Author(s): Thanh T. Tran License: GPL (>= 2) http://crantastic.org/packages/frmqa R and C++ functions for financial risk management and quantative analysis, using the generalized perbolic and its related distributions. * geospt (0.4-9) Maintainer: Alí Santacruz Author(s): Carlos Melo <cm...@udistrital.edu.co>, Alí Santacruz, Oscar Melo <oome...@unal.edu.co> and others License: GPL (>= 2) http://crantastic.org/packages/geospt This package contains functions for: estimation of the variogram through trimmed mean, radial basis functions (optimization, prediction and cross-validation), summary statistics from cross-validation, pocket plot, and design of optimal sampling networks through sequential and simultaneous points methods * JohnsonDistribution (0.24) Maintainer: A.I. McLeod Author(s): A.I. McLeod and Leanna King License: GPL (>= 2) http://crantastic.org/packages/JohnsonDistribution Johnson curve distributions. Implementation of AS100 and AS99. * labeledLoop (0.1) Maintainer: Kohske Takahashi Author(s): Kohske Takahashi License: MIT http://crantastic.org/packages/labeledLoop Support labeled loop and escape from nested loop * logitnorm (0.8.26) Maintainer: Thomas Wutzler Author(s): Thomas Wutzler License: GPL-2 http://crantastic.org/packages/logitnorm Density, distribution, quantile and random generation function for the logitnormal distribution. Estimation of the mode and the first two moments. Estimation of distribution parameters. * LOST (1.0) Maintainer: Jessica Arbour Author(s): J. Arbour and C. Brown License: GPL (>= 2) http://crantastic.org/packages/LOST LOST includes functions for simulating missing morphometric data randomly, with taxonomic bias and with anatomical bias. This package also includes functions for estimating missing morphometric data based on regression. * NHPoisson (1.0) Maintainer: Ana C. Cebrian Author(s): Ana C. Cebrian License: GPL (>= 2) http://crantastic.org/packages/NHPoisson Tools for modelling, ML estimation, validation analysis and simulation of non homogeneous Poisson processes in time. * pacose (1.0) Maintainer: Vincent Guillemot Author(s): Vincent Guillemot, Andreas Bender License: GPL http://crantastic.org/packages/pacose Implementation of iPACOSE, PACOSE and of various methods for the estimation of covariance/precision matrices under the constraint that some partial correlation coefficients are equal to zero. * pcaL1 (1.0) Maintainer: Paul Brooks Author(s): Sapan Jot <sapan.mad...@gmail.com> and Paul Brooks <jpbro...@vcu.edu>. The scripts configure and configure.ac and the file INSTALL are based on those in R package clpAPI <geliu...@uni-duesseldorf.de>. License: GPL (>= 2) http://crantastic.org/packages/pcaL1 This package contains three implementations of principal component analysis methods using the L1 norm. The package depends on COIN-OR Clp version >= 1.12.0. The methods implemented are PCA-L1 (Kwak 2008), L1-PCA (Ke and Kanade 2003, 2005), and L1-PCA* (Brooks, Dula, and Boone 2012). * sft (0.0-4) Maintainer: Joe Houpt Author(s): Joe Houpt <jho...@indiana.edu>, Leslie Blaha <leslie.bl...@wpafb.af.mil> License: GPL (>= 2) http://crantastic.org/packages/sft This package contains a series of tools for analyzing Systems Factorial Technology data. This includes functions for plotting and statistically testing capacity coefficient functions and survivor interaction contrast functions. * stpp (0.1) Maintainer: Edith Gabriel Author(s): Edith Gabriel License: GPL-3 http://crantastic.org/packages/stpp A package for analysing, simulating and displaying space-time point patterns * TestSurvRec (1.01) Maintainer: Carlos Martinez Author(s): Dr. Carlos Martinez License: GPL-2 http://crantastic.org/packages/TestSurvRec These tests are weighted tests type logrank * VarEff (1.0) Maintainer: Natacha Nikolic Author(s): Natacha Nikolic and Claude Chevalet License: GPL (>= 2) http://crantastic.org/packages/VarEff Functions for estimate the changes of effective population size with coalescent approach. * vec2dtransf (1.0) Maintainer: German Carrillo Author(s): German Carrillo License: GPL (>= 2) http://crantastic.org/packages/vec2dtransf A package for applying affine and similarity transformations on vector spatial data (sp objects). Transformations can be defined from control points or directly from parameters. If redundant control points are provided Least Squares is applied allowing to obtain residuals and RMSE. Updated packages ---------------- abn (0.7), afmtools (0.1.7), ANN (0.1.4), bayesDem (1.5-1), bayesLife (0.3-3), bclust (1.3), bcp (3.0.1), blighty (3.1-4), bootRes (1.2.1), cccd (1.01), clpAPI (1.2.1), comparison (0.4-0), crs (0.15-15), dcemriS4 (0.47), ddepn (2.1), deldir (0.0-18), diptest (0.75-3), disclapmix (0.2), dlmap (1.12), dlnm (1.6.1), dlnm (1.6.2), doMC (1.2.5), doParallel (1.0.1), doRNG (1.2.6), doSNOW (1.0.6), flux (0.2-1), fOptions (2160.81), foreach (1.4.0), gdsfmt (0.9.8), GeneCycle (1.1.2), geometry (0.3-0), GGally (0.3.2), glpkAPI (1.2.3), gmodels (2.15.2), GWAF (2.0), GWAtoolbox (2.0.2), HAC (0.2-0), hash (2.1.0.2), hdlm (1.1.1), iterators (1.0.6), kaps (0.9-2), lcmm (1.5.2), LeLogicielR (1.2), lgcp (0.9-4), limSolve (1.5.3), lmomco (1.5.1), MCMCpack (1.2-3), MDM (1.1), mediation (4.0.1), meta (2.0-2), monomvn (1.8-10), MPTinR (0.8.10), mritc (0.4-0), msSurv (1.1-0), mvoutlier (1.9.7), nlsmsn (0.0-3), oblique.tree (1.1), oro.nifti (0.3.3), OUwie (1.18), pracma (1.0.5), qgraph (1.0.3), qualityTools (1.52), RcppArmadillo (0.3.0.2), ReadImages (0.1.3.2), rgrs (0.2-17), RHRV (2.6), robfilter (3.1), RVAideMemoire (0.9-9), RXKCD (1.7-2), saws (0.9-5.3), segmented (0.2-9.0), SPACECAP (1.0.5), spatstat (1.26-1), sprint (1.0.1), sybil (1.0.2), tempdisagg (0.13), tgp (2.4-7), timereg (1.6-3), tis (1.22), topicmodels (0.1-5), trio (1.4.26), xlsxjars (0.4.0), xpose4 (4.3.5), xpose4classic (4.3.5), xpose4data (4.3.5), xpose4generic (4.3.5), xpose4specific (4.3.5), zic (0.7.0) This email provided as a service for the R community by http://crantastic.org. 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