*I'm sorry, in some way I didn't see I was in the wrong directory. *
*The real error message is the following:*
hdf5_global_verbosity=3 load=1
Processing object: DNS ...... which is a Group
Processing object: BEAM ...... its a dataset...Dataset has ID83886084
Dataset has tid 50331968
Dataset has space id 67108870
Dataset has rank 2
Dataset has dims/maxdims: 4720 3184 / -1 -1
Allocating matrix with rank=2 dim=4720 0
calling vector_io. Hangs here with big datsets
Errore in hdf5load("RM-2007-GRAD-2048.St0.0.h5", verbosity = 3) :
Can't get type for R type: 19 (IO)
2013/2/4 Flavio Pons <flavio.p...@gmail.com>
> *Hi everyone, I am a new subscriber, so I hope I'm posting in the right
> way.
> I need to load a hdf5 file, so I installed the hdf5 libraries ad the hdf5
> R package; in downloaded a small sample file from the hdf5 website and I
> could correctly load it. But when I try to load my file:
> *
> require(hdf5)
> rm(list=ls())
> ls()
> hdf5load("my_file.h5", verbosity=3)
>
> *I get this error message:
> *
> Errore in hdf5load("my_file.h5", verbosity = 1) : unable to open HDF file:
> my_file.h5
>
> >
>
> HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
> #000: /Builds/unix/hdf5-1.8.4-patch1/src/H5F.c line 1514 in H5Fopen():
> unable to open file
> major: File accessability
> minor: Unable to open file
>
> #001: /Builds/unix/hdf5-1.8.4-patch1/src/H5F.c line 1218 in H5F_open():
> unable to open file
> major: File accessability
> minor: Unable to open file
>
> #002: /Builds/unix/hdf5-1.8.4-patch1/src/H5FD.c line 1079 in
> H5FD_open(): open failed
> major: Virtual File Layer
> minor: Unable to initialize object
>
> #003: /Builds/unix/hdf5-1.8.4-patch1/src/H5FDsec2.c line 365 in
> H5FD_sec2_open(): unable to open file
> major: File accessability
> minor: Unable to open file
>
> #004: /Builds/unix/hdf5-1.8.4-patch1/src/H5FDsec2.c line 365 in
> H5FD_sec2_open(): No such file or directory
> major: Internal error (too specific to document in detail)
> minor: System error message
>
> *I really can't see the problem. I get the same error both with OSX and
> Ubuntu; could it simply be that the file is too large? In that case, what
> could I try to do?
>
> Thanks in advance,*
> *
> *
> *Flavio*
>
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