On 16/03/2015 10:38, Srikanth Gumma wrote:
Hi,
I'm trying to install diveRsity package in our R installation. however it
always fails with the error message "Unsupported Fortran 90 compiler or
Fortran 90". Below is the full output. Appreciate any help.
Ask the maintainer of the package concerned (glasso). Its way of
detecting the complier is flaky (and does not meet current CRAN
requirements on cross-platform portability).
R
R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet"
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Platform: x86_64-unknown-linux-gnu (64-bit)
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install.packages("diversity")
--- Please select a CRAN mirror for use in this session ---
Warning messages:
1: package ‘diversity’ is not available (for R version 3.1.2)
2: Perhaps you meant ‘diveRsity’ ?
install.packages("diveRsity")
also installing the dependencies ‘glasso’, ‘qgraph’
trying URL 'http://cran.rstudio.com/src/contrib/glasso_1.8.tar.gz'
Content type 'application/x-gzip' length 41768 bytes (40 Kb)
opened URL
==================================================
downloaded 40 Kb
trying URL 'http://cran.rstudio.com/src/contrib/qgraph_1.3.1.tar.gz'
Content type 'application/x-gzip' length 211062 bytes (206 Kb)
opened URL
==================================================
downloaded 206 Kb
trying URL 'http://cran.rstudio.com/src/contrib/diveRsity_1.9.73.tar.gz'
Content type 'application/x-gzip' length 1330144 bytes (1.3 Mb)
opened URL
==================================================
downloaded 1.3 Mb
* installing *source* package ‘glasso’ ...
** package ‘glasso’ successfully unpacked and MD5 sums checked
This package requires a fortran 90 compiler. We assume
that your fortran 90 environment is set up appropriately.
Reference: Section on 'Using F95 code' in R-exts manual.
R_HOME is /app1/centos6.3/gnu/apps/R-3.1.2/lib64/R
Unsupported Fortran 90 compiler or Fortran 90
compilers unavailable! Stop!
ERROR: configuration failed for package ‘glasso’
* removing ‘/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/glasso’
ERROR: dependency ‘glasso’ is not available for package ‘qgraph’
* removing ‘/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/qgraph’
ERROR: dependency ‘qgraph’ is not available for package ‘diveRsity’
* removing ‘/nfs/app1/centos6.3/gnu/apps/R-3.1.2/lib64/R/library/diveRsity’
The downloaded source packages are in
‘/tmp/Rtmp2IAilr/downloaded_packages’
Warning messages:
1: In install.packages("diveRsity") :
installation of package ‘glasso’ had non-zero exit status
2: In install.packages("diveRsity") :
installation of package ‘qgraph’ had non-zero exit status
3: In install.packages("diveRsity") :
installation of package ‘diveRsity’ had non-zero exit status
Regards
Srikanth.
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______________________________________________
[email protected] mailing list -- To UNSUBSCRIBE and more, see
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
