On Thu, 26 Jul 2007, Michael Cassin wrote: > Hi, > > I'm running R 2.4.1 on Fedora Core 6 and am unable to install the tseries > package. I've resolved a few problems getting to this point, by running a > yum update, installing the gcc-gfortran dependency, but now I'm stuck. > Could someone please point me in the right direction?
Please read the posting guide and provide the information you were asked for: only then we may be able to help you. You seem to have a system which installed R in /usr/lib/R but has x86_64 components on it. So what architecture is it that you are trying to run? My guess is that you installed a i386 RPM on a x86_64 OS. That will install and R will run *but* you will not be able to use it to install packages. If you installed the i386 RPM after the x86_64 one, it will have overwritten some crucial files including /usr/bin/R. It is possible to have i386 and x86_64 R coexisting on x86_64 Linux, but not by installing RPMs for different architectures. > > ========R install.packages output ======= > ================================== > >> install.packages("tseries") > > trying URL ' > http://www.sourcekeg.co.uk/cran/src/contrib/tseries_0.10-11.tar.gz' > Content type 'application/x-tar' length 182043 bytes > opened URL > ================================================== > downloaded 177Kb > > * Installing *source* package 'tseries' ... > ** libs > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include > -fpic -O3 -g -std=gnu99 -c arma.c -o arma.o > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include > -fpic -O3 -g -std=gnu99 -c bdstest.c -o bdstest.o > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include > -fpic -O3 -g -std=gnu99 -c boot.c -o boot.o > gfortran -fpic -O2 -g -c dsumsl.f -o dsumsl.o > In file dsumsl.f:450 > > IF (IV(1) - 2) 30, 40, 50 > 1 > Warning: Obsolete: arithmetic IF statement at (1) > In file dsumsl.f:3702 > > 10 ASSIGN 30 TO NEXT > 1 > Warning: Obsolete: ASSIGN statement at (1) > In file dsumsl.f:3707 > > 20 GO TO NEXT,(30, 50, 70, 110) > 1 > Warning: Obsolete: Assigned GOTO statement at (1) > In file dsumsl.f:3709 > > ASSIGN 50 TO NEXT > 1 > Warning: Obsolete: ASSIGN statement at (1) > In file dsumsl.f:3718 > > ASSIGN 70 TO NEXT > 1 > Warning: Obsolete: ASSIGN statement at (1) > In file dsumsl.f:3724 > > ASSIGN 110 TO NEXT > 1 > Warning: Obsolete: ASSIGN statement at (1) > In file dsumsl.f:4552 > > IF (IV(1) - 2) 999, 30, 70 > 1 > Warning: Obsolete: arithmetic IF statement at (1) > In file dsumsl.f:4714 > > IF (IRC) 140, 100, 210 > 1 > Warning: Obsolete: arithmetic IF statement at (1) > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include > -fpic -O3 -g -std=gnu99 -c garch.c -o garch.o > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include > -fpic -O3 -g -std=gnu99 -c ppsum.c -o ppsum.o > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include > -fpic -O3 -g -std=gnu99 -c tsutils.c -o tsutils.o > gcc -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o tseries.so arma.o > bdstest.o boot.o dsumsl.o garch.o ppsum.o tsutils.o -L/usr/lib/R/lib -lRblas > -lgfortran -lm -lgcc_s -lgfortran -lm -lgcc_s -L/usr/lib/R/lib -lR > /usr/bin/ld: skipping incompatible /usr/lib/R/lib/libRblas.so when searching > for -lRblas > /usr/bin/ld: skipping incompatible /usr/lib/R/lib/libRblas.so when searching > for -lRblas > /usr/bin/ld: cannot find -lRblas > collect2: ld returned 1 exit status > make: *** [tseries.so] Error 1 > ERROR: compilation failed for package 'tseries' > ** Removing '/usr/lib/R/library/tseries' > > > ============================================= > ============================================= > > > I presume the priority is addressing the error: "/usr/bin/ld: cannot find > -lRblas" > > I have the libRblas.so file with R 2.4. Do I need to upgrade to R 2.5 - In > which case I'll be asking how to fix the problems I'm having doing that ;) > > [~]# yum provides libRblas.so > <snip> > > R.x86_64 2.5.1-2.fc6 extras > Matched from: > /usr/lib64/R/lib/libRblas.so > libRblas.so()(64bit) > > R.x86_64 2.5.1-2.fc6 extras > Matched from: > /usr/lib64/R/lib/libRblas.so > libRblas.so()(64bit) > > R.i386 2:2.4.1-1.fc6 installed > Matched from: > /usr/lib/R/lib/libRblas.so > libRblas.so > > R.x86_64 2.4.1-4.fc6 installed > Matched from: > /usr/lib64/R/lib/libRblas.so > libRblas.so()(64bit) > > > Regards, > Mike > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595 ______________________________________________ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.