---------- Forwarded message ---------- From: Dirk Eddelbuettel <e...@debian.org> Date: 20 July 2015 at 19:21 Subject: Re: [R-pkg-devel] Setting up R-devel in Linux Mint 17.1 64-bit To: MAURICIO ZAMBRANO BIGIARINI <mauricio.zambr...@ufrontera.cl> Cc: Dirk Eddelbuettel <e...@debian.org>, r-package-devel@r-project.org
On 20 July 2015 at 18:56, MAURICIO ZAMBRANO BIGIARINI wrote: | how can I be sure that I I enabled the shared library support ? edd@max:~/svn/r-devel$ ./configure --help | grep enable-R-sh --enable-R-shlib build the shared/dynamic library 'libR' [no] edd@max:~/svn/r-devel$ Make sure you set --enable-R-shlib. It is in the script which you linked to in your previous email. I thought I did it already when running configure: ./configure --prefix=/usr/local/lib/R-devel --enable-R-shlib --with-blas --with-lapack --with-readline --without-recommended-packages I just tried to run again your script (mentioned in my previous e-mail) from scratch and I'm still getting an error: R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /usr/local/lib/R-devel C compiler: ccache gcc -ggdb -pipe -std=gnu99 -Wall -pedantic Fortran 77 compiler: ccache gfortran -g -O2 C++ compiler: ccache g++ -ggdb -pipe -Wall -pedantic C++11 compiler: ccache g++ -std=c++11 -ggdb -pipe -Wall -pedantic Fortran 90/95 compiler: ccache gfortran -g -O2 Obj-C compiler: Interfaces supported: X11, tcltk External libraries: readline, BLAS(generic), LAPACK(generic), curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling Capabilities skipped: Options not enabled: shared BLAS, memory profiling Recommended packages: no make[1]: Entering directory `/home/hzambran/SVN/R-devel/trunk/doc/manual' make[1]: Nothing to be done for `front-matter'. make[1]: Nothing to be done for `html-non-svn'. make[1]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/doc/manual' SVN-REVISION is unchanged make[1]: Entering directory `/home/hzambran/SVN/R-devel/trunk/m4' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/m4' make[1]: Entering directory `/home/hzambran/SVN/R-devel/trunk/tools' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/tools' make[1]: Entering directory `/home/hzambran/SVN/R-devel/trunk/doc' make[2]: Entering directory `/home/hzambran/SVN/R-devel/trunk/doc/html' make[2]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/doc/html' make[2]: Entering directory `/home/hzambran/SVN/R-devel/trunk/doc/manual' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/doc/manual' make[1]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/doc' make[1]: Entering directory `/home/hzambran/SVN/R-devel/trunk/etc' make[1]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/etc' make[1]: Entering directory `/home/hzambran/SVN/R-devel/trunk/share' make[1]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/share' make[1]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src' make[2]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/scripts' creating src/scripts/R.fe make[3]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/scripts' make[3]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/scripts' make[2]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/scripts' make[2]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/include' config.status: creating src/include/config.h config.status: src/include/config.h is unchanged Rmath.h is unchanged make[3]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/include/R_ext' make[3]: Nothing to be done for `R'. make[3]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/include/R_ext' make[2]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/include' make[2]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/extra' make[3]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/extra/tre' make[4]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/extra/tre' make[4]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/extra/tre' make[4]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/extra/tre' make[4]: `libtre.a' is up to date. make[4]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/extra/tre' make[3]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/extra/tre' make[2]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/extra' make[2]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/appl' make[3]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/appl' make[3]: `libappl.a' is up to date. make[3]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/appl' make[2]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/appl' make[2]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/nmath' make[3]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/nmath' make[3]: `libnmath.a' is up to date. make[3]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/nmath' make[2]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/nmath' make[2]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/unix' make[3]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/unix' make[3]: `libunix.a' is up to date. make[3]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/unix' make[3]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/unix' ccache gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -ggdb -pipe -std=gnu99 -Wall -pedantic -L/usr/local/lib -DR_HOME='"/home/hzambran/SVN/R-devel/trunk"' \ -o Rscript ./Rscript.c make[3]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/unix' make[2]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/unix' make[2]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/main' make[3]: Entering directory `/home/hzambran/SVN/R-devel/trunk/src/main' ccache gcc -shared -fopenmp -L/usr/local/lib -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lquadmath -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n /usr/bin/ld: ../appl/dchdc.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC ../appl/dchdc.o: error adding symbols: Bad value collect2: error: ld returned 1 exit status make[3]: *** [libR.so] Error 1 make[3]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/main' make[2]: *** [R] Error 2 make[2]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src/main' make[1]: *** [R] Error 1 make[1]: Leaving directory `/home/hzambran/SVN/R-devel/trunk/src' make: *** [R] Error 1 *** Done -- now run 'make install' Any thoughts what I'm doing wrong ? Mauricio ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel