Thx Sebastian I set _R_CLASS_MATRIX_ARRAY_ to true in console and also in onLoad, but could not replicate the error in console. In addition, setting _R_CLASS_MATRIX_ARRAY_ to "" in onLoad did not solve the problem while checking as cran.
I do not understand how the values I got from the debug print when checking as cran could result in the error. Any ideas? On Thu, Nov 28, 2019 at 3:00 AM Sebastian Meyer <seb.me...@fau.de> wrote: > This is most likely related to the recently changed class of matrices. > > R> class(matrix(1)) > > returned "matrix" but will return c("matrix", "array") in future > versions of R. See the corresponding item in the R-devel NEWS > > https://stat.ethz.ch/R-manual/R-devel/doc/html/NEWS.html > > To reproduce the error, you need a fairly recent R-devel and set the > environment variable > > _R_CLASS_MATRIX_ARRAY_=true > > On CRAN, this configuration is currently only used in the two R-devel > flavors which give warnings for your package. > > Happy debugging! > > Sebastian > > > Am 27.11.19 um 23:16 schrieb Fernando Roa: > > After Ege answer, I could replicate the error(s): list' object cannot be > > coerced to type 'double' > > with CMD check: bash R-devel.sh CMD check --as-cran > > idiogramFISH_1.9.1.tar.gz in a vmware > > debian guest with the r-devel (4.0) version of R installed after: > > http://singmann.org/installing-r-devel-on-linux/ > > > > Error does not occur in a R-devel console session installed > > in /usr/local/lib/R-devel/bin > > > > After adding debug prints to the code, problem points to a mapply > > > > Here are the values I got with debug printing > > > > labelytoplot<-list(c(0.654545454545455, 0.654545454545455, > > 0.763636363636364, 0.763636363636364), c(0.872727272727273, > > 0.872727272727273, 0.981818181818182, 0.981818181818182), > > c(1.09090909090909, 1.09090909090909, 1.2, 1.2), c(1.30909090909091, > > 1.30909090909091, 1.41818181818182, 1.41818181818182)) > > labelxtoplot<-list(c(42.5, 44.75, 44.75, 42.5), c(42.5, 44.75, 44.75, > > 42.5), c(42.5, 44.75, 44.75, 42.5), c(42.5, 44.75, 44.75, 42.5)) > > borders<-marks<-c("green","blue","yellow","black") > > > > CODE producing the error in R CMD check only: > > # plot(1:50) > > mapply(function(x,y,z,w) graphics::polygon(x=x, > > y=y, > > col=z, > > lwd=rep(.5,length(marks) ) > > ,border=w > > ), > > x = labelxtoplot, > > y = labelytoplot > > ,z = marks > > ,w = borders > > ) > > > > Grateful for any guidance , > > > > > > > > > > > > > > On Wed, Nov 27, 2019 at 8:34 AM Ege Rubak <ru...@math.aau.dk> wrote: > > > >> On 27/11/2019 00.22, Fernando Roa wrote: > >>> - I used a guest debian 10 in vmware in my system, and couldn't > replicate > >>> the error installing with R CMD INSTALL .... > >> > >> I guess you should rather run "R CMD check ..." on the tar.gz file to > >> reproduce the error. > >> > >> Hope that helps. > >> > >> /Ege > >> > >> ______________________________________________ > >> R-package-devel@r-project.org mailing list > >> https://stat.ethz.ch/mailman/listinfo/r-package-devel > > > > > > Original message: > > I got a warning only in debian after submitting package to CRAN. > > I want to replicate the vignette warning of debian in the following link > to > > solve it: > > > > Debian: > > > https://win-builder.r-project.org/incoming_pretest/idiogramFISH_1.9.1_20191126_012524/Debian/00check.log > > 1 WARNING > > > > Warning summary: > > "checking re-building of vignette outputs ... [15s/17s] WARNING > > Error(s) in re-building vignettes: > > 'list' object cannot be coerced to type 'double'" several times > > -- > > > > - I used a guest debian 10 in vmware in my system, and couldn't replicate > > the error installing with R CMD INSTALL .... > > > > - In R of host, I installed rhub and run > > rhub::check_with_sanitizers() # success > > rhub::check_on_debian() # does not work because of vignette dependencies > > not installed > > rhub::check(platform = "debian-gcc-devel") # does not work because of > > vignette dependencies not installed > > > > https://pastebin.com/wwhbqcSw > > > > Grateful for any guidance > > > > > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > -- Fernando Roa [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel