This was exactly what needed to be done. (inherits in conditional) Thank you ,
Issue Closed. Best, On Thu, Nov 28, 2019 at 12:16 PM Sebastian Meyer <seb.me...@fau.de> wrote: > I was able to reproduce the vignette error in an R-devel session with this > environment variable set. It came from a strange polygon() call with x and > y arguments being matrices with list elements. > > I cannot test at the moment. Maybe you condition on > class(something) == "matrix" > somewhere in your code? This should be replaced by > inherits(something, "matrix") > since in future R, matrix objects also formally belong to the array class, > so the class vector has length two. See the corresponding blog post by > Martin Mächler for further details: > > https://developer.r-project.org/Blog/public/2019/11/09/when-you-think-class.-think-again/index.html > > Cheers, Sebastian > > Am 28. November 2019 14:56:37 MEZ schrieb Fernando Roa <fr...@unal.edu.co > >: > >Thx Sebastian > >I set _R_CLASS_MATRIX_ARRAY_ to true in console and also in onLoad, but > >could not replicate the error in console. > >In addition, setting _R_CLASS_MATRIX_ARRAY_ to "" in onLoad did not > >solve the problem while checking as cran. > > > >I do not understand how the values I got from the debug print when > >checking > >as cran could result in the error. > > > >Any ideas? > > > >On Thu, Nov 28, 2019 at 3:00 AM Sebastian Meyer <seb.me...@fau.de> > >wrote: > > > >> This is most likely related to the recently changed class of > >matrices. > >> > >> R> class(matrix(1)) > >> > >> returned "matrix" but will return c("matrix", "array") in future > >> versions of R. See the corresponding item in the R-devel NEWS > >> > >> https://stat.ethz.ch/R-manual/R-devel/doc/html/NEWS.html > >> > >> To reproduce the error, you need a fairly recent R-devel and set the > >> environment variable > >> > >> _R_CLASS_MATRIX_ARRAY_=true > >> > >> On CRAN, this configuration is currently only used in the two R-devel > >> flavors which give warnings for your package. > >> > >> Happy debugging! > >> > >> Sebastian > >> > >> > >> Am 27.11.19 um 23:16 schrieb Fernando Roa: > >> > After Ege answer, I could replicate the error(s): list' object > >cannot be > >> > coerced to type 'double' > >> > with CMD check: bash R-devel.sh CMD check --as-cran > >> > idiogramFISH_1.9.1.tar.gz in a vmware > >> > debian guest with the r-devel (4.0) version of R installed after: > >> > http://singmann.org/installing-r-devel-on-linux/ > >> > > >> > Error does not occur in a R-devel console session installed > >> > in /usr/local/lib/R-devel/bin > >> > > >> > After adding debug prints to the code, problem points to a mapply > >> > > >> > Here are the values I got with debug printing > >> > > >> > labelytoplot<-list(c(0.654545454545455, 0.654545454545455, > >> > 0.763636363636364, 0.763636363636364), c(0.872727272727273, > >> > 0.872727272727273, 0.981818181818182, 0.981818181818182), > >> > c(1.09090909090909, 1.09090909090909, 1.2, 1.2), > >c(1.30909090909091, > >> > 1.30909090909091, 1.41818181818182, 1.41818181818182)) > >> > labelxtoplot<-list(c(42.5, 44.75, 44.75, 42.5), c(42.5, 44.75, > >44.75, > >> > 42.5), c(42.5, 44.75, 44.75, 42.5), c(42.5, 44.75, 44.75, 42.5)) > >> > borders<-marks<-c("green","blue","yellow","black") > >> > > >> > CODE producing the error in R CMD check only: > >> > # plot(1:50) > >> > mapply(function(x,y,z,w) graphics::polygon(x=x, > >> > y=y, > >> > col=z, > >> > lwd=rep(.5,length(marks) > >) > >> > ,border=w > >> > ), > >> > x = labelxtoplot, > >> > y = labelytoplot > >> > ,z = marks > >> > ,w = borders > >> > ) > >> > > >> > Grateful for any guidance , > >> > > >> > > >> > > >> > > >> > > >> > > >> > On Wed, Nov 27, 2019 at 8:34 AM Ege Rubak <ru...@math.aau.dk> > >wrote: > >> > > >> >> On 27/11/2019 00.22, Fernando Roa wrote: > >> >>> - I used a guest debian 10 in vmware in my system, and couldn't > >> replicate > >> >>> the error installing with R CMD INSTALL .... > >> >> > >> >> I guess you should rather run "R CMD check ..." on the tar.gz file > >to > >> >> reproduce the error. > >> >> > >> >> Hope that helps. > >> >> > >> >> /Ege > >> >> > >> >> ______________________________________________ > >> >> R-package-devel@r-project.org mailing list > >> >> https://stat.ethz.ch/mailman/listinfo/r-package-devel > >> > > >> > > >> > Original message: > >> > I got a warning only in debian after submitting package to CRAN. > >> > I want to replicate the vignette warning of debian in the following > >link > >> to > >> > solve it: > >> > > >> > Debian: > >> > > >> > > > https://win-builder.r-project.org/incoming_pretest/idiogramFISH_1.9.1_20191126_012524/Debian/00check.log > >> > 1 WARNING > >> > > >> > Warning summary: > >> > "checking re-building of vignette outputs ... [15s/17s] WARNING > >> > Error(s) in re-building vignettes: > >> > 'list' object cannot be coerced to type 'double'" several times > >> > -- > >> > > >> > - I used a guest debian 10 in vmware in my system, and couldn't > >replicate > >> > the error installing with R CMD INSTALL .... > >> > > >> > - In R of host, I installed rhub and run > >> > rhub::check_with_sanitizers() # success > >> > rhub::check_on_debian() # does not work because of vignette > >dependencies > >> > not installed > >> > rhub::check(platform = "debian-gcc-devel") # does not work because > >of > >> > vignette dependencies not installed > >> > > >> > https://pastebin.com/wwhbqcSw > >> > > >> > Grateful for any guidance > >> > > >> > > >> > >> ______________________________________________ > >> R-package-devel@r-project.org mailing list > >> https://stat.ethz.ch/mailman/listinfo/r-package-devel > >> > -- Fernando Roa [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel