Hi Erin,
when you are building from sources, you can always uncomment the example
in str.Rd. But it would be good first to find out why it is failing on
your system/build.
Please run the example in Rgui of the official R 3.6.3 build on your
machine. Does it work there?
Please run the following commands in Rgui of the official R 3.6.3 build
on the machine and on your custom build. What do you get?
Sys.getlocale()
enc2native("\uff21")
enc2native("\u4e2d")
Sys.setlocale("LC_CTYPE", "English_United States.28605")
enc2native("\uff21")
enc2native("\u4e2d")
extSoftVersion()[c("iconv","BLAS")]
Thanks,
Tomas
On 3/20/20 2:35 PM, Erin Hodgess wrote:
> I was wondering if there is a way to either skip the utilities check
> and continuing, in order to test the other packages, please.
>
> Thanks!
>
>
> On Fri, Mar 20, 2020 at 5:01 AM Martin Maechler
> <maech...@stat.math.ethz.ch <mailto:maech...@stat.math.ethz.ch>> wrote:
>
> >>>>> Erin Hodgess on Thu, 19 Mar 2020 22:44:39 -0600 writes:
>
> > Hi Tomas and others:
> > Here is the session Info. I also used the str example both
> without and
> > with changing the locale.
>
> > sI <- sessionInfo()
> >> str(sI)
> > List of 10
> > $ R.version :List of 14
> > ..$ platform : chr "x86_64-w64-mingw32"
> > ..$ arch : chr "x86_64"
> > ..$ os : chr "mingw32"
> > ..$ system : chr "x86_64, mingw32"
> > ..$ status : chr ""
> > ..$ major : chr "3"
> > ..$ minor : chr "6.3"
> > ..$ year : chr "2020"
> > ..$ month : chr "02"
> > ..$ day : chr "29"
> > ..$ svn rev : chr "77875"
> > ..$ language : chr "R"
> > ..$ version.string: chr "R version 3.6.3 (2020-02-29)"
> > ..$ nickname : chr "Holding the Windsock"
> > $ platform : chr "x86_64-w64-mingw32/x64 (64-bit)"
> > $ locale : chr "LC_COLLATE=English_United
> > States.1252;LC_CTYPE=English_United
> States.1252;LC_MONETARY=English_United
> > States.125"| __truncated__
> > $ running : chr "Windows 10 x64 (build 18362)"
> > $ RNGkind : chr [1:3] "Mersenne-Twister" "Inversion"
> "Rejection"
> > $ basePkgs : chr [1:7] "stats" "graphics" "grDevices"
> "utils" ...
> > $ loadedOnly:List of 1
> > ..$ compiler:List of 9
> > .. ..$ Package : chr "compiler"
> > .. ..$ Version : chr "3.6.3"
> > .. ..$ Priority : chr "base"
> > .. ..$ Title : chr "The R Compiler Package"
> > .. ..$ Author : chr "Luke Tierney
> <luke-tier...@uiowa.edu <mailto:luke-tier...@uiowa.edu>>"
> > .. ..$ Maintainer : chr "R Core Team <r-c...@r-project.org
> <mailto:r-c...@r-project.org>>"
> > .. ..$ Description: chr "Byte code compiler for R."
> > .. ..$ License : chr "Part of R 3.6.3"
> > .. ..$ Built : chr "R 3.6.3; ; 2020-03-20 04:29:00
> UTC; windows"
> > .. ..- attr(*, "class")= chr "packageDescription"
> > .. ..- attr(*, "file")= chr
> > "c:/newtimeR/R-3.6.3/library/compiler/Meta/package.rds"
> > $ matprod : chr "default"
> > $ BLAS : chr ""
> > $ LAPACK : chr ""
> > - attr(*, "class")= chr "sessionInfo"
>
>
> > Running the str example WITHOUT changing the locale:
> >> ## Truncation behavior (<-> correct width measurement) for
> "long"
> > non-ASCII:
> >> idx <- c(65313:65338, 65345:65350)
> >> fwch <- intToUtf8(idx) # full width character string: each
> has width 2
> >> ch <- strtrim(paste(LETTERS, collapse="._"), 64)
> >> (ncc <- c(c.ch <http://c.ch> = nchar(ch), w.ch
> <http://w.ch> = nchar(ch, "w"),
> > + c.fw = nchar(fwch), w.fw = nchar(fwch, "w")))
> > c.ch <http://c.ch> w.ch <http://w.ch> c.fw w.fw
> > 64 64 32 64
> >> stopifnot(unname(ncc) == c(64,64, 32, 64))
> >> ## nchar.max: 1st line needs an increase of 2 in order to
> see 1 (in
> > UTF-$
> >> invisible(lapply(60:66, function(N) str(fwch, nchar.max = N)))
> > chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+"|
> __truncated__
> > chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+F"|
> __truncated__
> > chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF"|
> __truncated__
> > chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF2"|
> __truncated__
> > chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF26"|
> __truncated__
> > chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF26>"|
> __truncated__
> > chr "<U+FF21><U+FF22><U+FF23><U+FF24><U+FF25><U+FF26><"|
> __truncated__
> >> invisible(lapply(60:66, function(N) str( ch , nchar.max =
> N))) # "1 is 1"
> > he$
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O"|
> __truncated__
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O."|
> __truncated__
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._"|
> __truncated__
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P"|
> __truncated__
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P."|
> __truncated__
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._"|
> __truncated__
> > chr
> "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._Q._R._S._T._U._V"
> >>
>
> > Running the str example WITH changing the locale:
>
> > oloc <- Sys.getlocale("LC_CTYPE")
> >> mbyte.lc <http://mbyte.lc> <- if(.Platform$OS.type ==
> "windows")
> > + "English_United States.28605" else "en_GB.UTF-8"
> >> try(Sys.setlocale("LC_CTYPE", mbyte.lc <http://mbyte.lc>))
> > [1] "English_United States.28605"
> >> ## Truncation behavior (<-> correct width measurement) for
> "long"
> > non-ASCII:
> >> idx <- c(65313:65338, 65345:65350)
> >> fwch <- intToUtf8(idx) # full width character string: each
> has width 2
> >> ch <- strtrim(paste(LETTERS, collapse="._"), 64)
> >> (ncc <- c(c.ch <http://c.ch> = nchar(ch), w.ch
> <http://w.ch> = nchar(ch, "w"),
> > + c.fw = nchar(fwch), w.fw = nchar(fwch, "w")))
> > c.ch <http://c.ch> w.ch <http://w.ch> c.fw w.fw
> > 64 64 32 64
> >> stopifnot(unname(ncc) == c(64,64, 32, 64))
> >> ## nchar.max: 1st line needs an increase of 2 in order to
> see 1 (in
> > UTF-$
> >> invisible(lapply(60:66, function(N) str(fwch, nchar.max = N)))
> > Error in strtrim(x.lrg, nchar.max - nc) :
> > unsupported conversion from 'UTF-8' in codepage 28605
> >> invisible(lapply(60:66, function(N) str( ch , nchar.max =
> N))) # "1 is 1"
> > he$
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O"|
> __truncated__
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O."|
> __truncated__
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._"|
> __truncated__
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P"|
> __truncated__
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P."|
> __truncated__
> > chr "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._"|
> __truncated__
> > chr
> "A._B._C._D._E._F._G._H._I._J._K._L._M._N._O._P._Q._R._S._T._U._V"
>
> > This is pretty strange.
>
> It is strange indeed that strtrim() fails in this situation.
>
> From what you wrote previously, this only happens when you link
> with OpenBLAS but not when you use R's own BLAS.
> Are you sure that that was the only difference, but not rather
> the difference in the locales you used in your two versions of R
> on Windows?
>
> Martin
>
> > Thanks for any help.
>
> > Sincerely,
> > Erin
>
> > Erin Hodgess, PhD
> > mailto: erinm.hodg...@gmail.com
> <mailto:erinm.hodg...@gmail.com>
>
>
> > On Thu, Mar 19, 2020 at 2:29 AM Tomas Kalibera
> <tomas.kalib...@gmail.com <mailto:tomas.kalib...@gmail.com>>
> > wrote:
>
> >> Hi Erin,
> >>
> >> this comes from examples in ?str. Could you please try to
> find a minimal
> >> example to reproduce on your system based on that? I would
> look for
> >> "line needs" in ?str and experiment with reducing the
> example there
> >> while still getting the error. Once it is minimal, could
> you please try
> >> also on the official build of R on your machine?
> >>
> >> Also it would be nice to have a session info. If it works
> in the
> >> official build but not your custom build, then one would
> have to look
> >> also into how the custom build is done.
> >>
> >> Thanks
> >> Tomas
> >>
> >>
> >> On 3/19/20 8:02 AM, Erin Hodgess wrote:
> >> > Hello everyone:
> >> >
> >> > I have built the latest version of the OpenBLAS on my
> Windows 10 machine.
> >> > When I run make distribution in R, everything is fine.
> >> >
> >> > However, when I run make check all, I get the following
> error:
> >> >
> >> > C:\newtimeR\R-3.6.3\src\gnuwin32>make check-all
> >> > Testing examples for package 'base'
> >> > Testing examples for package 'tools'
> >> > comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
> >> > Testing examples for package 'utils'
> >> > Error: testing 'utils' failed
> >> > Execution halted
> >> > make[3]: *** [Makefile.win:29: test-Examples-Base] Error 1
> >> > make[2]: *** [Makefile.common:185: test-Examples] Error 2
> >> > make[1]: *** [Makefile.common:171: test-all-basics] Error 1
> >> > make: *** [Makefile:324: check-all] Error 2
> >> >
> >> > And here is the section from the .Rout.fail for utils:
> >> >
> >> >> ## Multibyte characters in strings (in multibyte locales):
> >> >> oloc <- Sys.getlocale("LC_CTYPE")
> >> >> mbyte.lc <http://mbyte.lc> <- if(.Platform$OS.type ==
> "windows")
> >> > + "English_United States.28605" else "en_GB.UTF-8"
> >> >> try(Sys.setlocale("LC_CTYPE", mbyte.lc <http://mbyte.lc>))
> >> > [1] "English_United States.28605"
> >> >> ## Truncation behavior (<-> correct width measurement)
> for "long"
> >> > non-ASCII:
> >> >> idx <- c(65313:65338, 65345:65350)
> >> >> fwch <- intToUtf8(idx) # full width character string:
> each has width 2
> >> >> ch <- strtrim(paste(LETTERS, collapse="._"), 64)
> >> >> (ncc <- c(c.ch <http://c.ch> = nchar(ch), w.ch
> <http://w.ch> = nchar(ch, "w"),
> >> > + c.fw = nchar(fwch), w.fw = nchar(fwch, "w")))
> >> > c.ch <http://c.ch> w.ch <http://w.ch> c.fw w.fw
> >> > 64 64 32 64
> >> >> stopifnot(unname(ncc) == c(64,64, 32, 64))
> >> >> ## nchar.max: 1st line needs an increase of 2 in order
> to see 1 (in
> >> > UTF-8!):
> >> >> invisible(lapply(60:66, function(N) str(fwch, nchar.max
> = N)))
> >> > Error in strtrim(x.lrg, nchar.max - nc) :
> >> > unsupported conversion from 'UTF-8' in codepage 28605
> >> > Calls: lapply ... FUN -> str -> str.default ->
> maybe_truncate -> strtrim
> >> > Execution halted
> >> >
> >> > Has anyone run into this before, please?
> >> >
> >> > If I run this line-by-line starting at the "idx <-",
> things are fine.
> >> >
> >> > I also compiled R from source without the OpenBLAS, and
> it was fine.
> >> >
> >> > Thanks for any suggestions.
> >> >
> >> > Sincerely,
> >> > Erin
> >> >
> >> >
> >> >
> >> > Erin Hodgess, PhD
> >> > mailto: erinm.hodg...@gmail.com
> <mailto:erinm.hodg...@gmail.com>
>
> --
> Erin Hodgess, PhD
> mailto: erinm.hodg...@gmail.com <mailto:erinm.hodg...@gmail.com>
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