Section 2.1 of the Writing R Extensions manual points out that percent symbols must (practically) always be escaped in Rd files. This includes within URLs.
On November 3, 2020 2:08:05 AM PST, "Maëlle SALMON via R-package-devel" <r-package-devel@r-project.org> wrote: >Hello, > >1) I found (via GitHub search for DOIs in DESCRIPTION >files >https://github.com/search?q=org%3Acran+%3Cdoi+user%3Acran+filename%3ADESCRIPTION&type=Code&ref=advsearch&l=&l=) >a package with an URL-encoded DOI see >https://github.com/cran/clust.bin.pair/blob/e464ac7e5d094bffd25b7c4cbba67820b60f1cc1/DESCRIPTION >and the resulting CRAN page >https://cran.r-project.org/web/packages/clust.bin.pair/index.html So I >think you are right to use URL encoding. > >I can reproduce the problem you get with the roxygen2-generated >package-level manual page. The problem is that when going from Rd to >HTML, the parts after "%" are ignored indeed. I'm not sure at what >level this should be fixed. I opened an issue in roxygen2 >https://github.com/r-lib/roxygen2/issues/1164 I hope others will have >more useful answers. :-) > >2) For that aspect I looked into a CITATION file I knew >https://github.com/ropensci/bomrang/blob/master/inst/CITATION > >For finding the version it uses meta$Version. So your CITATION could >e.g. become > >citHeader("To cite raytracing in publications use at least the first, >if not both:") > >year <- sub("-.*", "", meta$Date) >note <- sprintf("R package version %s", meta$Version) > >citEntry(entry = "manual", > title = "raytracing: An R package for identification and >tracking the atmospheric Rossby waves", > author = personList(c(person("Amanda", "Rehbein"), > person("Tercio", "Ambrizzi"), > person("Sergio", "Ibarra-Espinosa"), > person("Livia M. M.", "Dutra"))), > year = year, > url = "https://github.com/salvatirehbein/raytracing";, > note = note, > textVersion = > paste0("Rehbein, A., Ambrizzi, T., Ibarra-Espinosa, S., Dutra, L. M. >M.: Rossby Wave Ray Tracing v", meta$Version, ". >https://github.com/salvatirehbein/raytracing, ", year,".") >) > >citation(auto = meta) > >citFooter("Thanks") > >Maëlle. > > >Den söndag 1 november 2020 21:29:54 CET, Amanda Rehbein ><amanda.rehb...@usp.br> skrev: > > > > > >Dear R-Devs, > >I was wondering if someone could please help me to with two errors when >submitting a package to CRAN. > >1) At the DESCRIPTION file I added some DOI's with curled brackets "<>" >inside the "<>" (e.g. ><doi:10.1175/1520-0469(1981)038<1179:TSLROA>2.0.CO;2>). >I tried URLencode() the string in R and copy/paste the output into >the DESCRIPTION file, like this: ><doi:10.1175/1520-0469(1981)038%3C1179:TSLROA%3E2.0.CO;2>. But when I >load, >build, check, etc, and ?raytracing the DOI does not appear correctly. >Everything after the first "%" disappeared and obviously, the DOI >doesn't >work anymore. > > >2) I have a CITATION file at the sub-directory ins. Its content is like >this: > >citHeader("To cite raytracing in publications use one of below:") > >citEntry(entry = "manual", > title = "Atmospheric Rossby waves identification and >tracking >with a raytracing numerical model", > author = personList(c(person("Amanda", "Rehbein"), > person("Tercio", "Ambrizzi"), > person("Sergio", "Ibarra-Espinosa"), > person("Livia M. M.", "Dutra"))), > year = "2020", > url = "https://github.com/salvatirehbein/raytracing";, > > textVersion = > paste0("Rehbein, A., Ambrizzi, T., Ibarra-Espinosa, S., Dutra, L. M. >M.: >Atmospheric Rossby waves identification and tracking with a raytracing >numerical model ", packageVersion("raytracing"), ". >https://github.com/salvatirehbein/raytracing, 2020.") >) > >It passes all checks and gives a-okay citation when I type >citation("raytracing"). However, it fails in the CRAN tests with the >following error message. > >Reading CITATION file fails with > there is no package called 'raytracing' > when package is not installed. > >I will be very thankful for any help with this! Best, >Amanda > > [[alternative HTML version deleted]] > >______________________________________________ >R-package-devel@r-project.org mailing list >https://stat.ethz.ch/mailman/listinfo/r-package-devel > >______________________________________________ >R-package-devel@r-project.org mailing list >https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Sent from my phone. Please excuse my brevity. ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
