Dear Maëlle and Jeff, Thank you so much!
Best, Amanda Em ter., 3 de nov. de 2020 às 10:10, Jeff Newmiller < jdnew...@dcn.davis.ca.us> escreveu: > Section 2.1 of the Writing R Extensions manual points out that percent > symbols must (practically) always be escaped in Rd files. This includes > within URLs. > > On November 3, 2020 2:08:05 AM PST, "Maëlle SALMON via R-package-devel" < > r-package-devel@r-project.org> wrote: > >Hello, > > > >1) I found (via GitHub search for DOIs in DESCRIPTION > >files > https://github.com/search?q=org%3Acran+%3Cdoi+user%3Acran+filename%3ADESCRIPTION&type=Code&ref=advsearch&l=&l= > ) > >a package with an URL-encoded DOI see > > > https://github.com/cran/clust.bin.pair/blob/e464ac7e5d094bffd25b7c4cbba67820b60f1cc1/DESCRIPTION > >and the resulting CRAN page > >https://cran.r-project.org/web/packages/clust.bin.pair/index.html So I > >think you are right to use URL encoding. > > > >I can reproduce the problem you get with the roxygen2-generated > >package-level manual page. The problem is that when going from Rd to > >HTML, the parts after "%" are ignored indeed. I'm not sure at what > >level this should be fixed. I opened an issue in roxygen2 > >https://github.com/r-lib/roxygen2/issues/1164 I hope others will have > >more useful answers. :-) > > > >2) For that aspect I looked into a CITATION file I knew > >https://github.com/ropensci/bomrang/blob/master/inst/CITATION > > > >For finding the version it uses meta$Version. So your CITATION could > >e.g. become > > > >citHeader("To cite raytracing in publications use at least the first, > >if not both:") > > > >year <- sub("-.*", "", meta$Date) > >note <- sprintf("R package version %s", meta$Version) > > > >citEntry(entry = "manual", > > title = "raytracing: An R package for identification and > >tracking the atmospheric Rossby waves", > > author = personList(c(person("Amanda", "Rehbein"), > > person("Tercio", "Ambrizzi"), > > person("Sergio", "Ibarra-Espinosa"), > > person("Livia M. M.", "Dutra"))), > > year = year, > > url = "https://github.com/salvatirehbein/raytracing";, > > note = note, > > textVersion = > > paste0("Rehbein, A., Ambrizzi, T., Ibarra-Espinosa, S., Dutra, L. M. > >M.: Rossby Wave Ray Tracing v", meta$Version, ". > >https://github.com/salvatirehbein/raytracing, ", year,".") > >) > > > >citation(auto = meta) > > > >citFooter("Thanks") > > > >Maëlle. > > > > > >Den söndag 1 november 2020 21:29:54 CET, Amanda Rehbein > ><amanda.rehb...@usp.br> skrev: > > > > > > > > > > > >Dear R-Devs, > > > >I was wondering if someone could please help me to with two errors when > >submitting a package to CRAN. > > > >1) At the DESCRIPTION file I added some DOI's with curled brackets "<>" > >inside the "<>" (e.g. > ><doi:10.1175/1520-0469(1981)038<1179:TSLROA>2.0.CO;2>). > >I tried URLencode() the string in R and copy/paste the output into > >the DESCRIPTION file, like this: > ><doi:10.1175/1520-0469(1981)038%3C1179:TSLROA%3E2.0.CO;2>. But when I > >load, > >build, check, etc, and ?raytracing the DOI does not appear correctly. > >Everything after the first "%" disappeared and obviously, the DOI > >doesn't > >work anymore. > > > > > >2) I have a CITATION file at the sub-directory ins. Its content is like > >this: > > > >citHeader("To cite raytracing in publications use one of below:") > > > >citEntry(entry = "manual", > > title = "Atmospheric Rossby waves identification and > >tracking > >with a raytracing numerical model", > > author = personList(c(person("Amanda", "Rehbein"), > > person("Tercio", "Ambrizzi"), > > person("Sergio", "Ibarra-Espinosa"), > > person("Livia M. M.", "Dutra"))), > > year = "2020", > > url = "https://github.com/salvatirehbein/raytracing";, > > > > textVersion = > > paste0("Rehbein, A., Ambrizzi, T., Ibarra-Espinosa, S., Dutra, L. M. > >M.: > >Atmospheric Rossby waves identification and tracking with a raytracing > >numerical model ", packageVersion("raytracing"), ". > >https://github.com/salvatirehbein/raytracing, 2020.") > >) > > > >It passes all checks and gives a-okay citation when I type > >citation("raytracing"). However, it fails in the CRAN tests with the > >following error message. > > > >Reading CITATION file fails with > > there is no package called 'raytracing' > > when package is not installed. > > > >I will be very thankful for any help with this! Best, > >Amanda > > > > [[alternative HTML version deleted]] > > > >______________________________________________ > >R-package-devel@r-project.org mailing list > >https://stat.ethz.ch/mailman/listinfo/r-package-devel > > > >______________________________________________ > >R-package-devel@r-project.org mailing list > >https://stat.ethz.ch/mailman/listinfo/r-package-devel > > -- > Sent from my phone. Please excuse my brevity. > -- *Amanda Rehbein* MSc Atmospheric Sciences Department of Atmospheric Sciences, University of São Paulo Group of Climate Studies (GrEC) | http://www.grec.iag.usp.br Rua do Matão, 1226 - Cidade Universitária, São Paulo - SP - Brazil - 05508-090 Skype: amanda_rehbein1 | Phone: +55 11 3091-2852 [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
