On 28 January 2011 at 21:52, Ajay Ohri wrote: | use synaptic , search using fortran77 and blas and atlas (separately) and | install all those libs- not an exact answer but thats what worked for my | ubuntu 10.10 couple of days back | | specifically ubuntu packages | | | 4.0-2 (libcnf-dev) | 3.0.0-1ubuntu1 (revolution-mkl) | 1:4.1.1-5 (libnetcdf6) | 3.8.3-22ubuntu2 (libatlas-base-dev) | | I am not sure but I these were the packages that finally got the job done- | using synaptic
You are not adding anything of value to the discussion. Please consider reviewing http://en.wikipedia.org/wiki/Tractatus_Logico-Philosophicus#Proposition_7 Cheers, Dirk | | Websites- | http://decisionstats.com | | | | | | | On Fri, Jan 28, 2011 at 9:19 PM, Douglas Bates <[email protected]> wrote: | | > I feel like Marlon Brando in "On the Waterfront" where he's told "It's | > not your night, kid", except for me it has been the last two months | > trying to debug memory problems. Now I can't even install an old | > version of this package on a netbook running the Ubuntu 10.10 netbook | > remix because it can't find the libraries libf77blas and libatlas. | > | > I have even gone to the extent of removing the r-base-core package | > entirely and removing libatlas3gf-base then reinstalling everything. | > I still get | > | > | > bates@eeek:/var/tmp$ R CMD INSTALL lme4_0.999375-37.tar.gz | > * installing to library ‘/home/bates/R/i686-pc-linux-gnu-library/2.12’ | > * installing *source* package ‘lme4’ ... | > ** libs | > gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" | > -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g | > -c init.c -o init.o | > gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" | > -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g | > -c lmer.c -o lmer.o | > gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" | > -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g | > -c local_stubs.c -o local_stubs.o | > gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas | > -latlas -lgfortran -lm -L/usr/lib/R/lib -lR | > /usr/bin/ld: cannot find -lf77blas | > /usr/bin/ld: cannot find -latlas | > collect2: ld returned 1 exit status | > make: *** [lme4.so] Error 1 | > ERROR: compilation failed for package ‘lme4’ | > * removing ‘/home/bates/R/i686-pc-linux-gnu-library/2.12/lme4’ | > | > The thing that seems to be missing in /usr/lib/ is a symbolic link | > from libatlas.so.3gf to libatlas.so. All I have is | > | > | > lrwxrwxrwx 1 root root 33 2011-01-28 09:37 | > libatlas.so.3gf -> /etc/alternatives/libatlas.so.3gf | > | > Can someone tell me if I should see a link from libatlas.so.3gf to | > libatlas.so? | > | > _______________________________________________ | > R-SIG-Debian mailing list | > [email protected] | > https://stat.ethz.ch/mailman/listinfo/r-sig-debian | > | | [[alternative HTML version deleted]] | | | ---------------------------------------------------------------------- | _______________________________________________ | R-SIG-Debian mailing list | [email protected] | https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- Dirk Eddelbuettel | [email protected] | http://dirk.eddelbuettel.com _______________________________________________ R-SIG-Debian mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-debian
