very funny. but nice thoughts all the same cheers
ajay Websites- http://decisionstats.com On Fri, Jan 28, 2011 at 10:04 PM, Dirk Eddelbuettel <[email protected]> wrote: > > On 28 January 2011 at 21:52, Ajay Ohri wrote: > | use synaptic , search using fortran77 and blas and atlas (separately) and > | install all those libs- not an exact answer but thats what worked for my > | ubuntu 10.10 couple of days back > | > | specifically ubuntu packages > | > | > | 4.0-2 (libcnf-dev) > | 3.0.0-1ubuntu1 (revolution-mkl) > | 1:4.1.1-5 (libnetcdf6) > | 3.8.3-22ubuntu2 (libatlas-base-dev) > | > | I am not sure but I these were the packages that finally got the job > done- > | using synaptic > > You are not adding anything of value to the discussion. Please consider > reviewing > > > http://en.wikipedia.org/wiki/Tractatus_Logico-Philosophicus#Proposition_7 > > Cheers, Dirk > > | > | Websites- > | http://decisionstats.com > | > | > | > | > | > | > | On Fri, Jan 28, 2011 at 9:19 PM, Douglas Bates <[email protected]> > wrote: > | > | > I feel like Marlon Brando in "On the Waterfront" where he's told "It's > | > not your night, kid", except for me it has been the last two months > | > trying to debug memory problems. Now I can't even install an old > | > version of this package on a netbook running the Ubuntu 10.10 netbook > | > remix because it can't find the libraries libf77blas and libatlas. > | > > | > I have even gone to the extent of removing the r-base-core package > | > entirely and removing libatlas3gf-base then reinstalling everything. > | > I still get > | > > | > > | > bates@eeek:/var/tmp$ R CMD INSTALL lme4_0.999375-37.tar.gz > | > * installing to library â/home/bates/R/i686-pc-linux-gnu-library/2.12â > | > * installing *source* package âlme4â ... > | > ** libs > | > gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" > | > -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g > | > -c init.c -o init.o > | > gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" > | > -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g > | > -c lmer.c -o lmer.o > | > gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" > | > -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g > | > -c local_stubs.c -o local_stubs.o > | > gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas > | > -latlas -lgfortran -lm -L/usr/lib/R/lib -lR > | > /usr/bin/ld: cannot find -lf77blas > | > /usr/bin/ld: cannot find -latlas > | > collect2: ld returned 1 exit status > | > make: *** [lme4.so] Error 1 > | > ERROR: compilation failed for package âlme4â > | > * removing â/home/bates/R/i686-pc-linux-gnu-library/2.12/lme4â > | > > | > The thing that seems to be missing in /usr/lib/ is a symbolic link > | > from libatlas.so.3gf to libatlas.so. All I have is > | > > | > > | > lrwxrwxrwx 1 root root 33 2011-01-28 09:37 > | > libatlas.so.3gf -> /etc/alternatives/libatlas.so.3gf > | > > | > Can someone tell me if I should see a link from libatlas.so.3gf to > | > libatlas.so? > | > > | > _______________________________________________ > | > R-SIG-Debian mailing list > | > [email protected] > | > https://stat.ethz.ch/mailman/listinfo/r-sig-debian > | > > | > | [[alternative HTML version deleted]] > | > | > | ---------------------------------------------------------------------- > | _______________________________________________ > | R-SIG-Debian mailing list > | [email protected] > | https://stat.ethz.ch/mailman/listinfo/r-sig-debian > > -- > Dirk Eddelbuettel | [email protected] | http://dirk.eddelbuettel.com > [[alternative HTML version deleted]]
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