On Wed, Aug 24, 2011 at 5:40 PM, Sebastian P. Luque <[email protected]>wrote:
> On Wed, 24 Aug 2011 13:30:37 +0200, > Roger Bivand <[email protected]> wrote: > > > On Tue, 23 Aug 2011, Sebastian P. Luque wrote: > >> Hello, > > >> I'm on a Debian sid system, and after a an upgrade of packages > >> ('apt-get upgrade') over the weekend, loading rgdal no longer works: > > > Debian GIS packages are not reliable. The CRAN debian checks failed in > > mid-May with a libgdal upgrade, which got resolved after some time > > without clear diagnoses - possibly an upstream dependency issue in > > something one libgdal build depended on and another not. General > > advice with Debian and derivative systems is to install GDAL from > > source if possible to avoid this kind of issue. The feel of the error > > message is that some components have been built with different C++ > > versions, so your question about re-installing rgdal for upgraded GDAL > > binaries has two answers, no if C++ and its libraries have not > > changed, yes if they have. > > > I haven't seen a reply on R-sig-debian, so please report back there > > too if you make progress. > > Thanks Roger; I tried reinstalling rgdal, and got some more clues > following install.packages("rgdal") (relevant lines only): > > /usr/lib/libgdal1.7.0.so: undefined reference to > `libdap::AISConnect::AISConnect(std::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&)' > collect2: ld returned 1 exit status > ./configure: line 3366: ./proj_conf_test: No such file or directory > PROJ.4 Version 4.7 or earlier > /usr/lib/libgdal1.7.0.so: undefined reference to > `libdap::AISConnect::AISConnect(std::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&)' > collect2: ld returned 1 exit status > ./configure: line 3409: ./proj_conf_test: No such file or directory > /usr/lib/libgdal1.7.0.so: undefined reference to > `libdap::AISConnect::AISConnect(std::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&)' > collect2: ld returned 1 exit status > ./configure: line 3459: ./proj_conf_test: No such file or directory > > and: > > /usr/lib/libgdal1.7.0.so: undefined reference to > `libdap::AISConnect::AISConnect(std::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&)' > collect2: ld returned 1 exit status > ./configure: line 3366: ./proj_conf_test: No such file or directory > PROJ.4 Version 4.7 or earlier > /usr/lib/libgdal1.7.0.so: undefined reference to > `libdap::AISConnect::AISConnect(std::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&)' > collect2: ld returned 1 exit status > ./configure: line 3409: ./proj_conf_test: No such file or directory > /usr/lib/libgdal1.7.0.so: undefined reference to > `libdap::AISConnect::AISConnect(std::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&)' > collect2: ld returned 1 exit status > ./configure: line 3459: ./proj_conf_test: No such file or directory > > in addition to the error I previously reported. So AFAICS, it seems > like a problem with Debian sid's libgdal1-1.7.0 or one of the libdap > packages, given the "undefined reference to > 'libdap::AISConnect::AISConnect(std::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&)' line. > > In my experience, proj usually points to something related to proj4 - are you sure that proj4 os properly installed, including dev files (not sure if needed, but likely)? Rainer > Cheers, > > -- > Seb > > _______________________________________________ > R-SIG-Debian mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-debian > -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax (F): +33 - (0)9 58 10 27 44 Fax (D): +49 - (0)3 21 21 25 22 44 email: [email protected] Skype: RMkrug [[alternative HTML version deleted]] _______________________________________________ R-SIG-Debian mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-debian
