On Thu, 25 Aug 2011 11:15:35 +0200, Rainer M Krug <[email protected]> wrote:
> On Wed, Aug 24, 2011 at 5:40 PM, Sebastian P. Luque <[email protected]>wrote: >> On Wed, 24 Aug 2011 13:30:37 +0200, >> Roger Bivand <[email protected]> wrote: >> > On Tue, 23 Aug 2011, Sebastian P. Luque wrote: >> >> Hello, >> >> I'm on a Debian sid system, and after a an upgrade of packages >> >> ('apt-get upgrade') over the weekend, loading rgdal no longer works: >> > Debian GIS packages are not reliable. The CRAN debian checks failed >> in > mid-May with a libgdal upgrade, which got resolved after some >> time > without clear diagnoses - possibly an upstream dependency >> issue in > something one libgdal build depended on and another >> not. General > advice with Debian and derivative systems is to >> install GDAL from > source if possible to avoid this kind of >> issue. The feel of the error > message is that some components have >> been built with different C++ > versions, so your question about >> re-installing rgdal for upgraded GDAL > binaries has two answers, no >> if C++ and its libraries have not > changed, yes if they have. >> > I haven't seen a reply on R-sig-debian, so please report back there >> > too if you make progress. >> Thanks Roger; I tried reinstalling rgdal, and got some more clues >> following install.packages("rgdal") (relevant lines only): >> /usr/lib/libgdal1.7.0.so: undefined reference to >> `libdap::AISConnect::AISConnect(std::basic_string<char, >> std::char_traits<char>, std::allocator<char> > const&)' collect2: ld >> returned 1 exit status ./configure: line 3366: ./proj_conf_test: No >> such file or directory PROJ.4 Version 4.7 or earlier >> /usr/lib/libgdal1.7.0.so: undefined reference to >> `libdap::AISConnect::AISConnect(std::basic_string<char, >> std::char_traits<char>, std::allocator<char> > const&)' collect2: ld >> returned 1 exit status ./configure: line 3409: ./proj_conf_test: No >> such file or directory /usr/lib/libgdal1.7.0.so: undefined reference >> to `libdap::AISConnect::AISConnect(std::basic_string<char, >> std::char_traits<char>, std::allocator<char> > const&)' collect2: ld >> returned 1 exit status ./configure: line 3459: ./proj_conf_test: No >> such file or directory >> and: >> /usr/lib/libgdal1.7.0.so: undefined reference to >> `libdap::AISConnect::AISConnect(std::basic_string<char, >> std::char_traits<char>, std::allocator<char> > const&)' collect2: ld >> returned 1 exit status ./configure: line 3366: ./proj_conf_test: No >> such file or directory PROJ.4 Version 4.7 or earlier >> /usr/lib/libgdal1.7.0.so: undefined reference to >> `libdap::AISConnect::AISConnect(std::basic_string<char, >> std::char_traits<char>, std::allocator<char> > const&)' collect2: ld >> returned 1 exit status ./configure: line 3409: ./proj_conf_test: No >> such file or directory /usr/lib/libgdal1.7.0.so: undefined reference >> to `libdap::AISConnect::AISConnect(std::basic_string<char, >> std::char_traits<char>, std::allocator<char> > const&)' collect2: ld >> returned 1 exit status ./configure: line 3459: ./proj_conf_test: No >> such file or directory >> in addition to the error I previously reported. So AFAICS, it seems >> like a problem with Debian sid's libgdal1-1.7.0 or one of the libdap >> packages, given the "undefined reference to >> 'libdap::AISConnect::AISConnect(std::basic_string<char, >> std::char_traits<char>, std::allocator<char> > const&)' line. > In my experience, proj usually points to something related to proj4 - > are you sure that proj4 os properly installed, including dev files > (not sure if needed, but likely)? I think the problem comes from this bug: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=638294 because when I found this conflict, I went ahead and used "dpkg -i --force-overwrite ..", which may have botched my libdap. It looks like we will soon have a new version. Cheers, -- Seb _______________________________________________ R-SIG-Debian mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-debian
