-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On 17/10/12 22:12, Dirk Eddelbuettel wrote: > OB On 17 October 2012 at 15:29, Ben Weinstein wrote: | Hi dirk, | | Thanks > for your response! I > appreciate all help. I can see that the file does | not exist. I'm wondering > on what level this > error is occurring with the | rgdal package, with the gdal source or with > the proj source. I > believe it is | the rgdal package. Are you familiar with this package, > perhaps there is a | > stable version that i should find. I was able to overcome the other errors, > but | as you note > the error simply notifies me that a file does not exist. > > I am not really familiar with gdal and the spatial stack, but as this has > come before, I did in > fact verify at some point or other that the packages "just build" in my > (fairly standard Ubuntu > / Debian) environment. > > Which they do -- as CRAN tests (among other systems) on a stock Debian > testing too. > > Now, on my box, I have > > edd@max:~$ ls -l /usr/lib/libgdal* -rw-r--r-- 1 root root 17832142 Nov 24 > 2011 > /usr/lib/libgdal1.7.0.a lrwxrwxrwx 1 root root 22 Nov 24 2011 > /usr/lib/libgdal1.7.0.so > -> libgdal1.7.0.so.1.14.3 lrwxrwxrwx 1 root root 22 Nov 24 2011 > /usr/lib/libgdal1.7.0.so.1 -> libgdal1.7.0.so.1.14.3 -rw-r--r-- 1 root root > 8148488 Nov 24 > 2011 /usr/lib/libgdal1.7.0.so.1.14.3 edd@max:~$ > > And the soft link with the trailing .1 and .1.14.3 are typically added by the > package > management system when the -dev package is installed. > > Your situation is a little different as you have local libraries. To that > extent, the list is > not really a good source of help for your non-standard problem.
May I suggest to post to r-sig-geo, as that list is concerned with, among others, rgdal? Cheers, Rainer > > Dirk > > | Thanks again for your help, | | Ben | | | On Wed, Oct 17, 2012 at 3:14 PM, > Dirk Eddelbuettel > <[email protected]> wrote: | | | On 17 October 2012 at 14:19, Ben Weinstein > wrote: | | Hi > all, | | | | I have successfully made and installed both gdal, and > proj.4, but still | > | cannot get rgdal to be installed in R. I think i'm very close. I do not | > | have root > access, if that matters, i've installed everything locally. I'm | | using > debian on a > beowulf cluster. | | | | I call: | | | | > install.packages("rgdal", > .libPaths()[1], configure.args = | | > "--with-gdal-config=/usr/local/pkg/gdal/bin/gdal-config | | > --with-proj-include=/nfs/user08/bw4sz/include | | > --with-proj-lib=/nfs/user08/bw4sz/lib") | > | | | i've defeated the gdal-config and the api_proj.h file errors that > have | | > plagued others. Now i believe i've run into a smaller problem. | | | > | The package > downloads and installs but it fails the lazy loading test | | | | | > | ** R | | > ** inst | | ** preparing package for lazy loading | | ** help | | > *** installing > help indices | | ** building package indices ... | | ** testing if > installed package > can be loaded | | Error in dyn.load(file, DLLpath = DLLpath, ...) : | > | unable to > load shared object | | '/nfs/user08/bw4sz/library/rgdal/libs/rgdal.so': | > | > libgdal.so.1: cannot open shared object file: No such file or | directory > | | The > dynamic linker thinks there should be a file (or a softlink) resolve | > libgdal.so.1, yet > there is none. | | You need to address that issue. | | Dirk | | | > Error: loading > failed | | | | with the R.Version() | | | | > R.Version() | > | $platform | > | [1] "x86_64-unknown-linux-gnu" | | | | $arch | | [1] "x86_64" | > | | | > $os | | [1] "linux-gnu" | | | | $system | | [1] "x86_64, > linux-gnu" | | | > | $status | | [1] "" | | | | $major | | [1] "2" | | | > | $minor | | > [1] "14.2" | | | | $year | | [1] "2012" | | | | $month | > | [1] "02" | > | | | $day | | [1] "29" | | | | $`svn rev` | | [1] > "58522" | | | | > $language | | [1] "R" | | | | $version.string | | [1] "R > version 2.14.2 > (2012-02-29)" | | | | Any thoughts are appreciated, | | | | > Best, | | | > | ben | | | | please forgive cross-posting on R-sig geo for those who > subscribe to | > both. | | | | Ben Weinstein | | Graduate Student | | Ecology > and Evolution | > | Stony Brook University | | | | > http://life.bio.sunysb.edu/~bweinste/index.html | > | | | [[alternative HTML version deleted]] | | | | > _______________________________________________ | | R-SIG-Debian mailing > list | | > [email protected] | | > https://stat.ethz.ch/mailman/listinfo/r-sig-debian | | > -- | Dirk Eddelbuettel | [email protected] | http://dirk.eddelbuettel.com | > | | | | -- | Ben > Weinstein | Graduate Student | Ecology and Evolution | Stony Brook University > | | > http://life.bio.sunysb.edu/~bweinste/index.html | > -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.11 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://www.enigmail.net/ iEYEARECAAYFAlB/ss0ACgkQoYgNqgF2ego1nQCeJBIvRTh1o3doTNANgtFWKtqX J2kAni7dmQ0HOMchRNqgVxr4K08+gI5p =umwv -----END PGP SIGNATURE----- _______________________________________________ R-SIG-Debian mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-debian
