Greetings On Wed, Oct 17, 2012 at 1:19 PM, Ben Weinstein <[email protected]> wrote: > Hi all, > > I have successfully made and installed both gdal, and proj.4, but still > cannot get rgdal to be installed in R. I think i'm very close. I do not > have root access, if that matters, i've installed everything locally. I'm > using debian on a beowulf cluster. > > I call: > > install.packages("rgdal", .libPaths()[1], configure.args = > "--with-gdal-config=/usr/local/pkg/gdal/bin/gdal-config > --with-proj-include=/nfs/user08/bw4sz/include > --with-proj-lib=/nfs/user08/bw4sz/lib") > > i've defeated the gdal-config and the api_proj.h file errors that have > plagued others. Now i believe i've run into a smaller problem. > > The package downloads and installs but it fails the lazy loading test >
Suppose before you try the build, you add that "libs" directory to the dynamic linker path, such as export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/nfs/user08/bw4sz/library/rgdal/libs/rgdal.so Then try the build. If that works, then you have a sortof classic "user in a Unix environment" problem. Either you need a system administrator to install that library and the devel stuff for it in the usual places, or you need to do some work to add the libs folder to your LD_LIBRARY_PATH. What do you think? pj > > ** R > ** inst > ** preparing package for lazy loading > ** help > *** installing help indices > ** building package indices ... > ** testing if installed package can be loaded > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared object > '/nfs/user08/bw4sz/library/rgdal/libs/rgdal.so': > libgdal.so.1: cannot open shared object file: No such file or directory > Error: loading failed > > with the R.Version() > >> R.Version() > $platform > [1] "x86_64-unknown-linux-gnu" > > $arch > [1] "x86_64" > > $os > [1] "linux-gnu" > > $system > [1] "x86_64, linux-gnu" > > $status > [1] "" > > $major > [1] "2" > > $minor > [1] "14.2" > > $year > [1] "2012" > > $month > [1] "02" > > $day > [1] "29" > > $`svn rev` > [1] "58522" > > $language > [1] "R" > > $version.string > [1] "R version 2.14.2 (2012-02-29)" > > Any thoughts are appreciated, > > Best, > > ben > > please forgive cross-posting on R-sig geo for those who subscribe to both. > > Ben Weinstein > Graduate Student > Ecology and Evolution > Stony Brook University > > http://life.bio.sunysb.edu/~bweinste/index.html > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Debian mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- Paul E. Johnson Professor, Political Science Assoc. Director 1541 Lilac Lane, Room 504 Center for Research Methods University of Kansas University of Kansas http://pj.freefaculty.org http://quant.ku.edu _______________________________________________ R-SIG-Debian mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-debian
