Hi All,
I’d like to use adegenet and poppr to analyze RADseq SNP data from Aspen trees.
I am limited in what I can do because I have not been able to convert my data
from genlight to genind. At one point I tried, but then gave up because of the
long computation time for the conversion I was attempting.
Is there a way to do the genlight to genind conversion? Otherwise, do you know
if the functions related to clonal and mixed reproduction in poppr are
implemented elsewhere (in R or outside of R)?
I know that genind objects are not efficient for storing SNP data. For what
it’s worth, we have 181 individuals and ~39000 SNPs.
Thanks advance for your help!
Dan.
--
Daniel Fulop, Ph.D.
Postdoctoral Scholar
Dept. Plant Biology, UC Davis
Maloof Lab, Rm. 2220
Life Sciences Addition, One Shields Ave.
Davis, CA 95616
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