> On Nov 21, 2016, at 06:27 , Felipe Hernández <[email protected]> wrote: > > On the other hand, I wonder is there is another package to test LD between > several multi-allelic loci at the same time (not only two loci)? Thanks for > your feedback!
Hi Felipe, There IS another method that can test LD between several loci. The index of association is a measure of multilocus linkage disequilibrium [0] and is implemented in the poppr R package with the function ia(). You can use it on a genind object, which can be converted from loci with the function loci2genind(). Best, Zhian [0]: http://onlinelibrary.wiley.com/doi/10.1046/j.1471-8278.2000.00014.x/abstract _______________________________________________ R-sig-genetics mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-genetics
