Many thanks, Thibaut. I will try the way you have suggested.
Kind regards, Rav On 16 Jan 2017, at 12:03, Thibaut Jombart <[email protected]<mailto:[email protected]>> wrote: Hello, Hs(x) in adegenet will do this for the expected heterozygosity. You can use 'summary' combined with seppop to get the average Hobs per population; example with sim2pop: > lapply(seppop(sim2pop), function(e) mean(summary(e)$Hobs, na.rm = TRUE)) $P01 [1] 0.755 $P02 [1] 0.77 Cheers Thibaut -- Dr Thibaut Jombart Lecturer, Department of Infectious Disease Epidemiology, Imperial College London Head of RECON: repidemicsconsortium.org<http://repidemicsconsortium.org/> sites.google.com/site/thibautjombart/<http://sites.google.com/site/thibautjombart/> github.com/thibautjombart<http://github.com/thibautjombart> Twitter: @TeebzR<http://twitter.com/TeebzR> +44(0)20 7594 3658 On 12 January 2017 at 13:19, Bhuller, Ravneet <[email protected]<mailto:[email protected]>> wrote: Dear Members, Is there any suitable package to compute observed heterozygosity within a population? I am interested to compute observed heterozygosity for a population using genind object, rather than at a locus. Many thanks for all your time. Kind regards, Rav _______________________________________________ R-sig-genetics mailing list [email protected]<mailto:[email protected]> https://stat.ethz.ch/mailman/listinfo/r-sig-genetics [[alternative HTML version deleted]] _______________________________________________ R-sig-genetics mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-genetics
