Hello dear community, I would have two questions:
The first one. I am looking for a way to count the number of polymorphic sites across a DNAbin object in R ? I was thinking about using the package Pegas, but I didn’t find any function that could do that. The second one. How can I expand a fasta file that contains unique sequences of haplotypes according to a frequency table ? I would be grateful to any guidance, Best wishes, Guillaume SCHWOB Post Doctorado en Ecología Microbiana Proyecto Genomics Antarctic Biodiversity (GAB) Laboratorio de Ecología Molecular (LEM) Departamento de Ciencias Ecológicas Facultad de Ciencias, Universidad de Chile Las Palmeras 3425, CP 7800003, Ñuñoa, Santiago, Chile http://www.antarcticgenomics.cl <http://www.antarcticgenomics.cl/> https://www.researchgate.net/profile/Guillaume_Schwob <https://www.researchgate.net/profile/Guillaume_Schwob> [[alternative HTML version deleted]] _______________________________________________ R-sig-genetics mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-genetics
