On 23 Jan 2013, at 11:07, Ivan Calandra <ivan.calan...@u-bourgogne.fr> wrote:
> Hi again,
>
> It probably won't be of any help for now, but you might need it in the
> future: I used to install packages from the package installer. Then I
> realized that it often messed up with dependencies.
I notice there is a nice 'install dependencies' checkbox on the GUI package
installer. It has always worked for me.
BW
F
> That's why the best way to install packages and their dependencies on Mac is
> to run install.packages("package") in the console.
>
> I hope you'll be able to fix your problem soon
> Ivan
>
> --
> Ivan CALANDRA
> Université de Bourgogne
> UMR CNRS/uB 6282 Biogéosciences
> 6 Boulevard Gabriel
> 21000 Dijon, FRANCE
> +33(0)3.80.39.63.06
> ivan.calan...@u-bourgogne.fr
> http://biogeosciences.u-bourgogne.fr/calandra
>
> Le 23/01/13 11:59, Ross Tinsley a écrit :
>> Hi Ivan
>>
>> In R I was going to the Packages and Data menu then clicking on Packages
>> Installer option. From there I selected CRAN sources and used that to search
>> for the below libraries (I also ticked the option to install dependencies).
>> Some such as Amelia did install but others one didn't. Prof Brian has given
>> some suggestions so I will follow up on those first, as I think my overall
>> install is not correct just yet.
>>
>> Will get back to you all on how I get on.
>>
>> Thanks
>>
>> Ross
>> *
>> Dr Ross Tinsley*
>> Head of Research | Editor IHTSJ
>> International Hospitality and Tourism Research Centre
>> *HTMi* | Hotel and Tourism Management Institute | Switzerland
>>
>>
>> On 23 Jan 2013, at 11:43, Ivan Calandra <ivan.calan...@u-bourgogne.fr
>> <mailto:ivan.calan...@u-bourgogne.fr>> wrote:
>>
>>> Hi!
>>>
>>> Not sure it will help you, but in the R.app, have you run
>>> install.packages("name of package") first? What is the error when you type
>>> library(name of package)?
>>>
>>> HTH,
>>> Ivan
>>>
>>> --
>>> Ivan CALANDRA
>>> Université de Bourgogne
>>> UMR CNRS/uB 6282 Biogéosciences
>>> 6 Boulevard Gabriel
>>> 21000 Dijon, FRANCE
>>> +33(0)3.80.39.63.06
>>> ivan.calan...@u-bourgogne.fr <mailto:ivan.calan...@u-bourgogne.fr>
>>> http://biogeosciences.u-bourgogne.fr/calandra
>>>
>>> Le 23/01/13 11:27, Ross Tinsley a écrit :
>>>> Originally posted this on the standard mailing list and it was suggested
>>>> that I post here on SIG Mac list. Have also included Beren's response who
>>>> emphasised using the R.app GUI, however I am doing this as my first step.
>>>> The below error message turns up there as well. Am stuck on the 'make'
>>>> command and how to make that work.
>>>>
>>>> Here are the commands in R I am trying to run.
>>>>
>>>> library(Amelia)
>>>> library(Hmisc)
>>>> library(polycor)
>>>> library(psych)
>>>> library(qgraph)
>>>> library(lavaan)
>>>> library(semTools)
>>>> library(paran)
>>>> library(nFactors)
>>>> library(GPArotation)
>>>> library(sem)
>>>> library(polycor)
>>>> library(rrcov)
>>>>
>>>> Thanks for any help.
>>>>
>>>>
>>>> Hello all
>>>>
>>>> I am a researcher in the field of tourism and have just recently installed
>>>> R64 and RStudio onto my Mac (running latest OS). I am ran into some
>>>> problems installing additional packages. I have looked through the General
>>>> FAQs and Mac FAQS but haven't been able to find a solution.
>>>>
>>>> I have downloaded the various packages I need from CRAN sources and while
>>>> some have successfully installed others have not. I have been following
>>>> the instructions on the Mac FAQ to unzip and install the downloaded
>>>> packages using the command line but the results seem to indicate an error
>>>> (they are installed but then don't work properly and so are subsequently
>>>> uninstalled). It happens on more than one so that's why I thought it might
>>>> be something generic I am doing. Here is a copy of the command line
>>>> results:
>>>>
>>>> Rosss-MacBook-Pro:~ rosstinsley$ R CMD INSTALL
>>>> /private/var/folders/ld/3f2dl80154z47_864skpt2_80000gn/T/Rtmp0ittcT/downloaded_packages/Hmisc_3.10-1.tar.gz
>>>> * installing to library
>>>> ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library’
>>>> * installing *source* package ‘Hmisc’ ...
>>>> ** package ‘Hmisc’ successfully unpacked and MD5 sums checked
>>>> ** libs
>>>> *** arch - i386
>>>> sh: make: command not found
>>>> ERROR: compilation failed for package ‘Hmisc’
>>>> * removing
>>>> ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/Hmisc’
>>>> Rosss-MacBook-Pro:~ rosstinsley$ R CMD INSTALL
>>>> /private/var/folders/ld/3f2dl80154z47_864skpt2_80000gn/T/Rtmp0ittcT/downloaded_packages/acepack_1.3-3.2.tar.gz
>>>> * installing to library
>>>> ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library’
>>>> * installing *source* package ‘acepack’ ...
>>>> ** package ‘acepack’ successfully unpacked and MD5 sums checked
>>>> ** libs
>>>> *** arch - i386
>>>> sh: make: command not found
>>>> ERROR: compilation failed for package ‘acepack’
>>>> * removing
>>>> ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/acepack’
>>>> Rosss-MacBook-Pro:~ rosstinsley$ R CMD INSTALL
>>>> /private/var/folders/ld/3f2dl80154z47_864skpt2_80000gn/T/Rtmp0ittcT/downloaded_packages/arm_1.6-01.02.tar.gz
>>>> * installing to library
>>>> ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library’
>>>> ERROR: dependency ‘lme4’ is not available for package ‘arm’
>>>> * removing
>>>> ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/arm’
>>>> Rosss-MacBook-Pro:~ rosstinsley$ R CMD INSTALL
>>>> /private/var/folders/ld/3f2dl80154z47_864skpt2_80000gn/T/Rtmp0ittcT/downloaded_packages/chron_2.3-43.tar.gz
>>>> * installing to library
>>>> ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library’
>>>> * installing *source* package ‘chron’ ...
>>>> ** package ‘chron’ successfully unpacked and MD5 sums checked
>>>> ** libs
>>>> *** arch - i386
>>>> sh: make: command not found
>>>> ERROR: compilation failed for package ‘chron’
>>>> * removing
>>>> ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/chron’
>>>>
>>>>
>>>>
>>>> Berend's response:
>>>>
>>>> 1. This belongs on the R-SIG-Mac mailing list
>>>>
>>>> 2. Why don't you use the R.app GUI to install the binary versions of the
>>>> required packages? Much easier.
>>>>
>>>> 3. The message: "sh: make: command not found" means that you don't have
>>>> make installed.
>>>> Most likely you don't have other required tools installed.
>>>> If you use the R.app GUI you don't really need tall those tools.
>>>>
>>>> Advice: use R.app to install and if needed get the Xcode tools but only if
>>>> you intend to compile your own packages.
>>>>
>>>> Berend
>>>>
>>>>
>>>>
>>>> [[alternative HTML version deleted]]
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> R-SIG-Mac mailing list
>>>> R-SIG-Mac@r-project.org
>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>
>>
>
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--
Federico C. F. Calboli
Neuroepidemiology and Ageing Research
Imperial College, St. Mary's Campus
Norfolk Place, London W2 1PG
Tel +44 (0)20 75941602 Fax +44 (0)20 75943193
f.calboli [.a.t] imperial.ac.uk
f.calboli [.a.t] gmail.com
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