Not sure if this is a bug or not, but there is different behavior
between R.app and command-line R as regards
DYLD_FALLBACK_LIBRARY_PATH.
If I start R.app and try and load the BioC package 'impute':
source('http://bioconductor.org/biocLite.R";)
biocLite("impute")
library(impute)
I get:
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/Library/Frameworks/R.framework.release/Versions/3.0/Resources/library/impute/libs/impute.so':
dlopen(/Library/Frameworks/R.framework.release/Versions/3.0/Resources/library/impute/libs/impute.so,
6): Library not loaded: /usr/local/lib/libgfortran.2.dylib
Referenced from:
/Library/Frameworks/R.framework.release/Versions/3.0/Resources/library/impute/libs/impute.so
Reason: image not found
Error: package or namespace load failed for 'impute'
However, the package loads fine in command-line R.
I found that if I start R.app like this:
export DYLD_FALLBACK_LIBRARY_PATH=/Library/Frameworks/R.framework/Resources/lib
open /Applications/R.app
Then I can load the impute package.
So can R.app set this variable when it starts? Or is there another
solution I need to look at?
Thanks,
Dan
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