On Wed, Apr 10, 2013 at 3:38 PM, Dan Tenenbaum <[email protected]> wrote: > Not sure if this is a bug or not, but there is different behavior > between R.app and command-line R as regards > DYLD_FALLBACK_LIBRARY_PATH. > > If I start R.app and try and load the BioC package 'impute': > > source('http://bioconductor.org/biocLite.R";) > biocLite("impute") > library(impute) > > I get: > > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared object > '/Library/Frameworks/R.framework.release/Versions/3.0/Resources/library/impute/libs/impute.so': > > dlopen(/Library/Frameworks/R.framework.release/Versions/3.0/Resources/library/impute/libs/impute.so, > 6): Library not loaded: /usr/local/lib/libgfortran.2.dylib > Referenced from: > /Library/Frameworks/R.framework.release/Versions/3.0/Resources/library/impute/libs/impute.so > Reason: image not found > Error: package or namespace load failed for 'impute' > > However, the package loads fine in command-line R. > > I found that if I start R.app like this: > > export > DYLD_FALLBACK_LIBRARY_PATH=/Library/Frameworks/R.framework/Resources/lib > open /Applications/R.app > > Then I can load the impute package. > > So can R.app set this variable when it starts? Or is there another > solution I need to look at? >
PS, sessionInfo() is R version 3.0.0 (2013-04-03) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] impute_1.34.0 BiocInstaller_1.10.0 loaded via a namespace (and not attached): [1] tools_3.0.0 Dan > Thanks, > Dan > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
