Could someone with the preference problems try the latest nightly build for R.app to see if the patch helps?
Thanks, Rob J. Goedman [email protected] On Nov 8, 2013, at 6:58 AM, Robert J Goedman <[email protected]> wrote: > Hi, > > Thanks for the feedback/updates. The flashing of the color chooser has been > there for a long time but I don't think that is causing this problem. > > I can trigger the problem in Xcode and it shows clearly where it crashes. Its > attempting to darken an icon image, pixel by pixel, but the image has no data > if (on our systems at least) the 'Set Color' is not used as the path to get > there. > > From what I've seen, it happens on a range of systems - below my > sessionInfo(). The work around is simple and I think innocuous enough that I > think I can commit. But it not very satisfactory not to get to the bottom of > this and to understand why only some of us encounter this problem. > > Rob J. Goedman > [email protected] > > > > [R.app GUI 1.62 (6588) x86_64-apple-darwin13.0.0] > > [Workspace restored from /Users/rob/Projects/.RData] > [History restored from /Users/rob/Projects/.Rapp.history] > > 2013-11-08 06:42:18.669 R[65942:707] No data in destData > (darkenedImageWithColor.m) >> sessionInfo() > R Under development (unstable) (2013-10-30 r64123) > Platform: x86_64-apple-darwin13.0.0/x86_64 (64-bit) > > locale: > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > loaded via a namespace (and not attached): > [1] coda_0.16-1 grid_3.1.0 inline_0.3.13 lattice_0.20-25 > Rcpp_0.10.6 rjags_3-11 rstan_2.0.1 > [8] stats4_3.1.0 >> > > > On Nov 8, 2013, at 3:00 AM, peter dalgaard <[email protected]> wrote: > >> I was just about to tell you guys that have the problem to try running R.app >> with gdb attached to the process. Then I realized that gdb has gone in >> Mavericks to be replaced by lldb, which I don't have much of a clue about >> how to operate.... >> >> However, at least the first few steps seem to be similar to using gdb: >> >> Get the process ID for R.app using >> >> Peters-iMac:~ pd$ ps aux | grep R.app >> pd 28620 0.1 0.5 3877356 21724 ?? S 1Nov13 >> 0:43.29 /Applications/R.app/Contents/MacOS/R >> pd 74190 0.0 0.0 2432784 596 s005 S+ 11:45AM >> 0:00.01 grep R.app >> >> Then attach to it using >> >> Peters-iMac:~ pd$ lldb -p 28620 >> >> give your password to allow the debugger to control the process, then, when >> lldb fires up, tell it to resume the process >> >> (lldb) continue >> Process 28620 resuming >> >> Next, you should try doing whatever it takes to reproduce the crash, figure >> out how to get a traceback, and report back to the list. >> >> -pd >> >> On 07 Nov 2013, at 10:19 , Rainer M Krug <[email protected]> wrote: >> >>> I have to confirm both, the crash and the flashing of the colour wheel. >>> >>> >>>> sessionInfo() >>> R version 3.0.2 (2013-09-25) >>> Platform: x86_64-apple-darwin10.8.0 (64-bit) >>> >>> locale: >>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >>> >>> attached base packages: >>> [1] stats graphics grDevices utils datasets methods base >>>> version >>> _ >>> platform x86_64-apple-darwin10.8.0 >>> arch x86_64 >>> os darwin10.8.0 >>> system x86_64, darwin10.8.0 >>> status >>> major 3 >>> minor 0.2 >>> year 2013 >>> month 09 >>> day 25 >>> svn rev 63987 >>> language R >>> version.string R version 3.0.2 (2013-09-25) >>> nickname Frisbee Sailing >>>> >>> >>> Cheers, >>> >>> Rainer >>> >>> >>> >>> On 11/07/13, 02:17 , John Magnotti wrote: >>>> I removed my current R.app and installed the one at: >>>> http://r.research.att.com/#GUI >>>> R-3.0-branch-snowleopard-signed.pkg >>>> >>>> but I still get an immediate crash when I 1) open the preferences >>>> window and 2) click any of the icons in the main "Show All" screen >>>> (but not the tabs) >>>> >>>> I also noticed that switching away from either the Color or the Syntax >>>> tab briefly flashes (open then close) the color wheel selection dialog >>>> >>>>> sessionInfo() >>>> R version 3.0.2 Patched (2013-11-04 r64155) >>>> Platform: x86_64-apple-darwin10.8.0 (64-bit) >>>> >>>> locale: >>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >>>> >>>> attached base packages: >>>> [1] stats graphics grDevices utils datasets methods base >>>> >>>> >>>> Is there any other specific information that would help? >>>> >>>> Thanks, >>>> >>>> John >>>> >>>> On Wed, Nov 6, 2013 at 10:12 AM, Brandon Hurr <[email protected]> wrote: >>>>> Robert, >>>>> >>>>> I never could reproduce what Brian, John or Ranier were seeing with my >>>>> install (downloaded from http://r.research.att.com/ . >>>>> >>>>> Perhaps they could chime back in and give you more details. >>>>> >>>>> I'm now running Mavericks and still cannot replicate. >>>>> R version 3.0.2 (2013-09-25) >>>>> Platform: x86_64-apple-darwin10.8.0 (64-bit) >>>>> >>>>> locale: >>>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >>>>> >>>>> attached base packages: >>>>> [1] stats graphics grDevices utils datasets methods base >>>>> >>>>> Brandon >>>>> >>>>> >>>>> On Wed, Nov 6, 2013 at 12:13 AM, Robert J Goedman >>>>> <[email protected]>wrote: >>>>> >>>>>> Brandon, >>>>>> >>>>>> Do you still see this problem? >>>>>> >>>>>> Are you using Simon's build? >>>>>> >>>>>> Regards, >>>>>> Rob J. Goedman >>>>>> [email protected] >>>>>> >>>>>> >>>>>> On Jan 2, 2013, at 3:28 AM, Prof Brian Ripley <[email protected]> >>>>>> wrote: >>>>>> >>>>>> On 01/01/2013 17:48, Robert J Goedman wrote: >>>>>> >>>>>> Thanks for taking a look. I'll dig a bit further after getting back home >>>>>> tomorrow. It only happens through 'Apple-,' and is then not limited to >>>>>> just the Startup preferences (contrary to what I thought earlier). >>>>>> >>>>>> >>>>>> There is a bug report, PR#15017, related to this that we also have not >>>>>> been able to reproduce. >>>>>> >>>>>> >>>>>> >>>>>> Rob J. Goedman >>>>>> [email protected] <mailto:[email protected] <[email protected]>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> On Jan 1, 2013, at 10:01 AM, Prof Brian Ripley <[email protected] >>>>>> <mailto:[email protected] <[email protected]>>> wrote: >>>>>> >>>>>> Sorry, cannot reproduce (with Simon's build or mine, on Lion). >>>>>> >>>>>> Brian >>>>>> >>>>>> On 31/12/2012 19:37, Robert J Goedman wrote: >>>>>> >>>>>> Simon & Brian, >>>>>> >>>>>> Surely this is not high on your minds today, but I did notice an >>>>>> issue with R.app. >>>>>> >>>>>> Using below versions of R-3.0 and the Lion64 version of R.app I >>>>>> noticed that by immediately invoking the Startup preferences. e.g. by >>>>>> Command/Apple-, R.app will segfault: >>>>>> >>>>>> *** caught segfault *** >>>>>> address 0x10121d000, cause 'memory not mapped' >>>>>> ... >>>>>> >>>>>> Above route seems to always create the crash. I've seen a few other >>>>>> occurrences, always with the Startup preferences screen not being >>>>>> mapped, but less reproducible. Same behavior in Simon's build as in >>>>>> my own build of R.app. >>>>>> >>>>>> A reasonable work around is to get there through the Set Colors icon. >>>>>> I'm on OSX8.3 preview 3 and using Xcode 4.6 dp4. And using the CRAN >>>>>> version of R, did not yet build R myself as outlined in the Install file. >>>>>> >>>>>> Happy New Year, regards, >>>>>> Rob J. Goedman >>>>>> [email protected] <mailto:[email protected] <[email protected]>> >>>>>> >>>>>> >>>>>> ------------ my own build---------------------------- >>>>>> >>>>>> R Under development (unstable) (2012-12-30 r61489) -- "Unsuffered >>>>>> Consequences" >>>>>> Copyright (C) 2012 The R Foundation for Statistical Computing >>>>>> ISBN 3-900051-07-0 >>>>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >>>>>> >>>>>> R is free software and comes with ABSOLUTELY NO WARRANTY. >>>>>> You are welcome to redistribute it under certain conditions. >>>>>> Type 'license()' or 'licence()' for distribution details. >>>>>> >>>>>> Natural language support but running in an English locale >>>>>> >>>>>> R is a collaborative project with many contributors. >>>>>> Type 'contributors()' for more information and >>>>>> 'citation()' on how to cite R or R packages in publications. >>>>>> >>>>>> Type 'demo()' for some demos, 'help()' for on-line help, or >>>>>> 'help.start()' for an HTML browser interface to help. >>>>>> Type 'q()' to quit R. >>>>>> >>>>>> [R.app GUI 1.53 (6418) x86_64-apple-darwin9.8.0] >>>>>> >>>>>> [Workspace restored from /Users/rob/Projects/.RData] >>>>>> [History restored from /Users/rob/Projects/.Rapp.history] >>>>>> >>>>>> sessionInfo() >>>>>> >>>>>> R Under development (unstable) (2012-12-30 r61489) >>>>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >>>>>> >>>>>> >>>>>> locale: >>>>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >>>>>> >>>>>> attached base packages: >>>>>> [1] stats graphics grDevices utils datasets methods base >>>>>> >>>>>> >>>>>> -------------R.app from >>>>>> Simon--------------------------------------------- >>>>>> >>>>>> R Under development (unstable) (2012-12-30 r61489) -- "Unsuffered >>>>>> Consequences" >>>>>> Copyright (C) 2012 The R Foundation for Statistical Computing >>>>>> ISBN 3-900051-07-0 >>>>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >>>>>> >>>>>> R is free software and comes with ABSOLUTELY NO WARRANTY. >>>>>> You are welcome to redistribute it under certain conditions. >>>>>> Type 'license()' or 'licence()' for distribution details. >>>>>> >>>>>> Natural language support but running in an English locale >>>>>> >>>>>> R is a collaborative project with many contributors. >>>>>> Type 'contributors()' for more information and >>>>>> 'citation()' on how to cite R or R packages in publications. >>>>>> >>>>>> Type 'demo()' for some demos, 'help()' for on-line help, or >>>>>> 'help.start()' for an HTML browser interface to help. >>>>>> Type 'q()' to quit R. >>>>>> >>>>>> [R.app GUI 1.53 (6418) x86_64-apple-darwin9.8.0] >>>>>> >>>>>> [Workspace restored from /Users/rob/Projects/.RData] >>>>>> [History restored from /Users/rob/Projects/.Rapp.history] >>>>>> >>>>>> sessionInfo() >>>>>> >>>>>> R Under development (unstable) (2012-12-30 r61489) >>>>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >>>>>> >>>>>> >>>>>> locale: >>>>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >>>>>> >>>>>> attached base packages: >>>>>> [1] stats graphics grDevices utils datasets methods base >>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> Brian D. Ripley, [email protected] >>>>>> <mailto:[email protected]<[email protected]> >>>>>>> >>>>>> Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ >>>>>> University of Oxford, Tel: +44 1865 272861 (self) >>>>>> 1 South Parks Road, +44 1865 272866 (PA) >>>>>> Oxford OX1 3TG, UK Fax: +44 1865 272595 >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> Brian D. Ripley, [email protected] >>>>>> Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ >>>>>> University of Oxford, Tel: +44 1865 272861 (self) >>>>>> 1 South Parks Road, +44 1865 272866 (PA) >>>>>> Oxford OX1 3TG, UK Fax: +44 1865 272595 >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> On Oct 2, 2013, at 6:09 AM, Brandon Hurr <[email protected]> wrote: >>>>>> >>>>>> I cannot reproduce on my mac mini (2011). OS X 10.8.5. >>>>>> >>>>>> R version 3.0.2 (2013-09-25) >>>>>> Platform: x86_64-apple-darwin10.8.0 (64-bit) >>>>>> >>>>>> locale: >>>>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >>>>>> >>>>>> attached base packages: >>>>>> [1] stats graphics grDevices utils datasets methods base >>>>>> >>>>>> >>>>>> On Wed, Oct 2, 2013 at 2:03 PM, John Magnotti <[email protected] >>>>>>> wrote: >>>>>> >>>>>> Going to the preferences screen in R.app (Command + , or >>>>>> R->preferences) and selecting any of the icons causes R to crash with >>>>>> a segfault. If I click any the tabs at the top of the preferences >>>>>> window R doesn't crash, but if I go back to the "show all" tab and >>>>>> choose an option it causes an immediate failure. >>>>>> >>>>>> I'm running OS X 10.8.5, sessionInfo pasted below >>>>>> >>>>>> Thoughts? >>>>>> >>>>>> John >>>>>> >>>>>> >>>>>> sessionInfo() >>>>>> >>>>>> R version 3.0.2 (2013-09-25) >>>>>> Platform: x86_64-apple-darwin10.8.0 (64-bit) >>>>>> >>>>>> locale: >>>>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >>>>>> >>>>>> attached base packages: >>>>>> [1] stats graphics grDevices utils datasets methods base >>>>>> >>>>>> _______________________________________________ >>>>>> R-SIG-Mac mailing list >>>>>> [email protected] >>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>>>> >>>>>> >>>>>> [[alternative HTML version deleted]] >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> R-SIG-Mac mailing list >>>>>> [email protected] >>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>>>>> >>>>>> >>>>>> >>>>> >>>>> [[alternative HTML version deleted]] >>>>> >>>>> _______________________________________________ >>>>> R-SIG-Mac mailing list >>>>> [email protected] >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >>> >>> >>> -- >>> Rainer M. Krug >>> >>> email: RMKrug<at>gmail<dot>com >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> [email protected] >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> -- >> Peter Dalgaard, Professor >> Center for Statistics, Copenhagen Business School >> Solbjerg Plads 3, 2000 Frederiksberg, Denmark >> Phone: (+45)38153501 >> Email: [email protected] Priv: [email protected] >> >> _______________________________________________ >> R-SIG-Mac mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
