Guillaume, The problem is that R can't find /usr/bin/gnutar. One way of fixing this is to install gnutar or to create a symbolic link to tar, which is available on Mavericks.
Rob J. Goedman [email protected] On Nov 28, 2013, at 7:11 AM, Guillaume Blanchet <[email protected]> wrote: > Hi ! > > I have recently updated my OS to Maverick and from this moment, I have been > unable to compile any packages (with or without C code in them). However, I > can install source package on my machine without any problem. In other words, > the command line > > R CMD INSTALL pkg > > works perfectly fine, where as the command line > > R CMD INSTALL --build pkg > > sends me the following insults after trying to compile any package (here for > the package spacemakeR): > > * installing to library > /Library/Frameworks/R.framework/Versions/3.0/Resources/library > * installing *source* package spacemakeR ... > ** R > ** inst > ** preparing package for lazy loading > ** help > *** installing help indices > ** building package indices > ** installing vignettes > tutorial.Rnw using UTF-8 > ** testing if installed package can be loaded > sh: /usr/bin/gnutar: No such file or directory > gzip: can't stat: > /Users/guslevesque/Documents/Recherche/Subversion/sedar/pkg/spacemakeR_0.0-5_R_x86_64-apple-darwin10.8.0.tar > > (/Users/guslevesque/Documents/Recherche/Subversion/sedar/pkg/spacemakeR_0.0-5_R_x86_64-apple-darwin10.8.0.tar): > No such file or directory > Avis dans file.rename(file.path(startdir, filename), file.path(startdir, : > impossible de renommer le fichier > '/Users/guslevesque/Documents/Recherche/Subversion/sedar/pkg/spacemakeR_0.0-5_R_x86_64-apple-darwin10.8.0.tar.gz' > en > '/Users/guslevesque/Documents/Recherche/Subversion/sedar/pkg/spacemakeR_0.0-5.tgz', > à cause de 'No such file or directory' > packaged installation of spacemakeR as spacemakeR_0.0-5.tgz > * DONE (spacemakeR) > > > Note that I have carefully followed advices posted on this list and I have > install XQuartz, XCode 5.0.2 and XCode command line tools and made following > modifications to the ~/.R/Makevars file: > > CC=clang > CXX=clang++ > CFLAGS="-mtune=native -g -O2 -Wall -pedantic -Wconversion" > CXXFLAGS="-mtune=native -g -O2 -Wall -pedantic -Wconversion" > > Any ideas what is causing this problem ? > > Thanks in advance for all the help ! > > Guillaume Blanchet > > P.S.: I almost forgot, I am working with R 3.0.2 > > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac [[alternative HTML version deleted]]
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