The complaint is about a component in package latticeExtra.
Do you have this package installed?
(latticExtra does not show as required when I load Hmisc
> require("Hmisc")
Loading required package: Hmisc
Loading required package: grid
Loading required package: lattice
Loading required package: survival
Loading required package: splines
Loading required package: Formula
but I do see latticeExtra in my installed library directory
/Library/Frameworks/R.framework/Versions/Current/Resources/library )
Steven McKinney
Statistician
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
________________________________________
From: [email protected] [[email protected]] On
Behalf Of Don McKenzie [[email protected]]
Sent: March 24, 2014 12:35 PM
To: [email protected]
Subject: [R-SIG-Mac] [R-sig-mac] Hmisc installed but won't load
My apologies if this has been addressed recently. Searching the archive and
google brought me only to older posts.
I’m not understanding the error message below when I try to load Hmisc. I
reinstalled it using the syntax suggested by Simon in an earlier post. I am
using the vanilla R GUI ("R 3.0.3 GUI 1.63 Snow Leopard build (6660)”) on OSX
10.9.2.
Thanks in advance.
> install.packages("Hmisc",,"http://cran.r-project.org";)
trying URL 'http://cran.r-project.org/bin/macosx/contrib/3.0/Hmisc_3.14-3.tgz'
Content type 'application/x-gzip' length 1555868 bytes (1.5 Mb)
opened URL
==================================================
downloaded 1.5 Mb
The downloaded binary packages are in
/var/folders/d1/r1hsc_s91pg18v_t23bq27tw0000gn/T//RtmpIPxtRG/downloaded_packages
> library("Hmisc")
Error in gzfile(file, "rb") : cannot open the connection *****************
In addition: Warning message:
In gzfile(file, "rb") :
cannot open compressed file
'/Library/Frameworks/R.framework/Versions/3.0/Resources/library/latticeExtra/data/Rdata.rdx',
probable reason 'No such file or directory'
Error: package or namespace load failed for ‘Hmisc’
> installed.packages()
.
.
.
Hmisc "Hmisc"
"/Library/Frameworks/R.framework/Versions/3.0/Resources/library" "3.14-3” NA
.
.
.
> sessionInfo()
R version 3.0.3 (2014-03-06)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] splines grid stats graphics grDevices utils datasets
methods base
other attached packages:
[1] Formula_1.1-1 survival_2.37-7 lattice_0.20-27 lavaan_0.5-15
MASS_7.3-29 plspm_0.4.1 turner_0.1.7 tester_0.1.7 diagram_1.6.2
shape_1.4.1 amap_0.8-12
loaded via a namespace (and not attached):
[1] mnormt_1.4-7 pbivnorm_0.5-1 quadprog_1.5-5 RColorBrewer_1.0-5
stats4_3.0.3 tools_3.0.3
Don McKenzie
Research Ecologist
Pacific Wildland Fire Sciences Lab
US Forest Service
Affiliate Professor
School of Environmental and Forest Sciences
University of Washington
[email protected]
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