Thanks David, Steven, and Berend. Good things to try. Don
On Mar 24, 2014, at 1:58 PM, David Winsemius <[email protected]> wrote: > > On Mar 24, 2014, at 1:23 PM, Don McKenzie wrote: > >> The plot thickens. I do indeed have latticeExtra installed, but observe. Is >> it turtles on down…? (and yes I have lattice installed too) >> >>> library("latticeExtra") >> Loading required package: RColorBrewer >> Loading required package: lattice >> Error in gzfile(file, "rb") : cannot open the connection >> In addition: Warning messages: >> 1: '.find.package' is deprecated. >> Use 'find.package' instead. >> See help("Deprecated") >> 2: In gzfile(file, "rb") : >> cannot open compressed file >> '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/latticeExtra/data/Rdata.rdx', >> probable reason 'No such file or directory' >> Error: package or namespace load failed for ‘latticeExtra’ >> >> Thanks for your response Steve. Ideas? > > I would trash your .Rdata image, restart R, and try again. > > (I just updated to that version of Hmisc and also updated rms, lattice and > latticeExtra and I'm having no trouble loading rms and Hmisc, which I load in > my .Rprofile at startup.) > > You should post output from sessionInfo() and .libPaths(). My prior problems > with keeping all packages up to date has lead me to use only one library > directory. > > -- > David. >> >> Don >> >> >> On Mar 24, 2014, at 1:13 PM, Steven McKinney <[email protected]> wrote: >> >>> The complaint is about a component in package latticeExtra. >>> >>> Do you have this package installed? >>> >>> (latticExtra does not show as required when I load Hmisc >>> >>>> require("Hmisc") >>> Loading required package: Hmisc >>> Loading required package: grid >>> Loading required package: lattice >>> Loading required package: survival >>> Loading required package: splines >>> Loading required package: Formula >>> >>> but I do see latticeExtra in my installed library directory >>> >>> /Library/Frameworks/R.framework/Versions/Current/Resources/library ) >>> >>> >>> >>> >>> Steven McKinney >>> >>> Statistician >>> Molecular Oncology and Breast Cancer Program >>> British Columbia Cancer Research Centre >>> >>> ________________________________________ >>> From: [email protected] [[email protected]] On >>> Behalf Of Don McKenzie [[email protected]] >>> Sent: March 24, 2014 12:35 PM >>> To: [email protected] >>> Subject: [R-SIG-Mac] [R-sig-mac] Hmisc installed but won't load >>> >>> My apologies if this has been addressed recently. Searching the archive and >>> google brought me only to older posts. >>> >>> I’m not understanding the error message below when I try to load Hmisc. I >>> reinstalled it using the syntax suggested by Simon in an earlier post. I am >>> using the vanilla R GUI ("R 3.0.3 GUI 1.63 Snow Leopard build (6660)”) on >>> OSX 10.9.2. >>> >>> Thanks in advance. >>> >>> >>>> install.packages("Hmisc",,"http://cran.r-project.org";) >>> trying URL >>> 'http://cran.r-project.org/bin/macosx/contrib/3.0/Hmisc_3.14-3.tgz' >>> Content type 'application/x-gzip' length 1555868 bytes (1.5 Mb) >>> opened URL >>> ================================================== >>> downloaded 1.5 Mb >>> >>> The downloaded binary packages are in >>> >>> /var/folders/d1/r1hsc_s91pg18v_t23bq27tw0000gn/T//RtmpIPxtRG/downloaded_packages >>> >>> >>> >>>> library("Hmisc") >>> Error in gzfile(file, "rb") : cannot open the connection >>> ***************** >>> In addition: Warning message: >>> In gzfile(file, "rb") : >>> cannot open compressed file >>> '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/latticeExtra/data/Rdata.rdx', >>> probable reason 'No such file or directory' >>> Error: package or namespace load failed for ‘Hmisc’ >>> >>> >>> >>>> installed.packages() >>> . >>> . >>> . >>> Hmisc "Hmisc" >>> "/Library/Frameworks/R.framework/Versions/3.0/Resources/library" "3.14-3” >>> NA >>> . >>> . >>> . >>> >>> >>>> sessionInfo() >>> R version 3.0.3 (2014-03-06) >>> Platform: x86_64-apple-darwin10.8.0 (64-bit) >>> >>> locale: >>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >>> >>> attached base packages: >>> [1] splines grid stats graphics grDevices utils datasets >>> methods base >>> >>> other attached packages: >>> [1] Formula_1.1-1 survival_2.37-7 lattice_0.20-27 lavaan_0.5-15 >>> MASS_7.3-29 plspm_0.4.1 turner_0.1.7 tester_0.1.7 >>> diagram_1.6.2 shape_1.4.1 amap_0.8-12 >>> >>> loaded via a namespace (and not attached): >>> [1] mnormt_1.4-7 pbivnorm_0.5-1 quadprog_1.5-5 >>> RColorBrewer_1.0-5 stats4_3.0.3 tools_3.0.3 >>> >>> >>> >>> >>> Don McKenzie >>> Research Ecologist >>> Pacific Wildland Fire Sciences Lab >>> US Forest Service >>> >>> Affiliate Professor >>> School of Environmental and Forest Sciences >>> University of Washington >>> [email protected] >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> [email protected] >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> Don McKenzie >> Research Ecologist >> Pacific Wildland Fire Sciences Lab >> US Forest Service >> >> Affiliate Professor >> School of Environmental and Forest Sciences >> University of Washington >> [email protected] >> >> _______________________________________________ >> R-SIG-Mac mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > David Winsemius > Alameda, CA, USA > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac Don McKenzie Research Ecologist Pacific Wildland Fire Sciences Lab US Forest Service Affiliate Professor School of Environmental and Forest Sciences University of Washington [email protected] _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
